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PDB: 159 results

8G09
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BU of 8g09 by Molmil
Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase rotational state 2 (backbone model)
Descriptor: 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Courbon, G.M, Rubinstein, J.L.
Deposit date:2023-01-31
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of mycobacterial ATP synthase inhibition by squaramides and second generation diarylquinolines.
Embo J., 42, 2023
8G0C
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Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Descriptor: (1R,2S)-1-(6-bromo-2-methoxyquinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2,3,6-trimethoxypyridin-4-yl)butan-2-ol, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Courbon, G.M, Rubinstein, J.L.
Deposit date:2023-01-31
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Mechanism of mycobacterial ATP synthase inhibition by squaramides and second generation diarylquinolines.
Embo J., 42, 2023
8G0D
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BU of 8g0d by Molmil
Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 2 (backbone model)
Descriptor: (1R,2S)-1-(6-bromo-2-methoxyquinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2,3,6-trimethoxypyridin-4-yl)butan-2-ol, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Courbon, G.M, Rubinstein, J.L.
Deposit date:2023-01-31
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Mechanism of mycobacterial ATP synthase inhibition by squaramides and second generation diarylquinolines.
Embo J., 42, 2023
8G08
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BU of 8g08 by Molmil
Cryo-EM structure of SQ31f-bound Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Descriptor: 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Courbon, G.M, Rubinstein, J.L.
Deposit date:2023-01-31
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Mechanism of mycobacterial ATP synthase inhibition by squaramides and second generation diarylquinolines.
Embo J., 42, 2023
8G0E
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BU of 8g0e by Molmil
Cryo-EM structure of TBAJ-876-bound Mycobacterium smegmatis ATP synthase rotational state 3
Descriptor: (1R,2S)-1-(6-bromo-2-methoxyquinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2,3,6-trimethoxypyridin-4-yl)butan-2-ol, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Courbon, G.M, Rubinstein, J.L.
Deposit date:2023-01-31
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Mechanism of mycobacterial ATP synthase inhibition by squaramides and second generation diarylquinolines.
Embo J., 42, 2023
6U7H
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BU of 6u7h by Molmil
Cryo-EM structure of the HCoV-229E spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, Z, Benlekbir, S, Rubinstein, J.L, Rini, J.M.
Deposit date:2019-09-02
Release date:2019-11-13
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The human coronavirus HCoV-229E S-protein structure and receptor binding.
Elife, 8, 2019
8F2K
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BU of 8f2k by Molmil
Structure of yeast F1-ATPase determined with 100 micromolar cruentaren A
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ATP synthase subunit beta, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-11-08
Release date:2023-04-05
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:CryoEM Structure with ATP Synthase Enables Late-Stage Diversification of Cruentaren A.
Chemistry, 29, 2023
3J9T
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BU of 3j9t by Molmil
Yeast V-ATPase state 1
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9U
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BU of 3j9u by Molmil
Yeast V-ATPase state 2
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9V
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BU of 3j9v by Molmil
Yeast V-ATPase state 3
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J0J
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BU of 3j0j by Molmil
Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Lau, W.C.Y, Rubinstein, J.L.
Deposit date:2011-08-24
Release date:2011-12-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.
Nature, 481, 2012
5G4F
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BU of 5g4f by Molmil
Structure of the ADP-bound VAT complex
Descriptor: VCP-LIKE ATPASE
Authors:Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
Deposit date:2016-05-12
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
5G4G
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BU of 5g4g by Molmil
Structure of the ATPgS-bound VAT complex
Descriptor: VCP-LIKE ATPASE
Authors:Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
Deposit date:2016-05-12
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
5GAR
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BU of 5gar by Molmil
Thermus thermophilus V/A-ATPase, conformation 1
Descriptor: Archaeal/vacuolar-type H+-ATPase subunit I, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Schep, D.G, Zhao, J, Rubinstein, J.L.
Deposit date:2016-02-05
Release date:2016-03-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
5FIK
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BU of 5fik by Molmil
Bovine mitochondrial ATP synthase state 3a
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-28
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5GAS
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BU of 5gas by Molmil
Thermus thermophilus V/A-ATPase, conformation 2
Descriptor: Archaeal/vacuolar-type H+-ATPase subunit I, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Schep, D.G, Zhao, J, Rubinstein, J.L.
Deposit date:2016-02-05
Release date:2016-03-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
5I1M
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BU of 5i1m by Molmil
Yeast V-ATPase average of densities, a subunit segment
Descriptor: V-type proton ATPase subunit a, vacuolar isoform
Authors:Schep, D.G, Zhao, J, Rubinstein, J.L.
Deposit date:2016-02-05
Release date:2016-03-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
8SMR
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BU of 8smr by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Descriptor: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
Authors:Di Trani, J.M, Rubinstein, J.L.
Deposit date:2023-04-26
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
8SNH
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BU of 8snh by Molmil
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Descriptor: (2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, CALCIUM ION, COPPER (II) ION, ...
Authors:Di Trani, J.M, Rubinstein, J.L.
Deposit date:2023-04-27
Release date:2023-10-11
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 120, 2023
7RH7
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BU of 7rh7 by Molmil
Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH6
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BU of 7rh6 by Molmil
Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH5
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BU of 7rh5 by Molmil
Mycobacterial CIII2CIV2 supercomplex, Inhibitor free
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2021-11-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
5ARH
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BU of 5arh by Molmil
Bovine mitochondrial ATP synthase state 2a
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-24
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5ARI
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BU of 5ari by Molmil
Bovine mitochondrial ATP synthase state 2b
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-24
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5ARA
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BU of 5ara by Molmil
Bovine mitochondrial ATP synthase state 1a
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-24
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015

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