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PDB: 165 results

3J9T
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Yeast V-ATPase state 1
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9V
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Yeast V-ATPase state 3
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9U
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Yeast V-ATPase state 2
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J0J
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Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Lau, W.C.Y, Rubinstein, J.L.
Deposit date:2011-08-24
Release date:2011-12-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.
Nature, 481, 2012
6B2Z
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Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase
Descriptor: ATP synthase protein 8, ATP synthase subunit a, ATP synthase subunit b, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2017-09-20
Release date:2017-11-08
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Science, 358, 2017
6B8H
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Mosaic model of yeast mitochondrial ATP synthase monomer
Descriptor: AATP synthase subunit g, ATP synthase catalytic sector F1 epsilon subunit, ATP synthase protein 8, ...
Authors:Guo, H, Bueler, S.A, Rubinstein, J.L.
Deposit date:2017-10-07
Release date:2018-01-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Science, 358, 2017
6BTM
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Structure of Alternative Complex III from Flavobacterium johnsoniae (Wild Type)
Descriptor: (2S)-3-hydroxypropane-1,2-diyl ditetradecanoate, Alternative Complex III subunit A, Alternative Complex III subunit B, ...
Authors:Sun, C, Benlekbir, S, Venkatakrishnan, P, Yuhang, W, Tajkhorshid, E, Rubinstein, J.L, Gennis, R.B.
Deposit date:2017-12-07
Release date:2018-05-09
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the alternative complex III in a supercomplex with cytochrome oxidase.
Nature, 557, 2018
7KR2
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ClpP from Neisseria meningitidis - Compressed conformation
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Ripstein, Z.A, Vahidi, S, Rubinstein, J.L, Kay, L.E.
Deposit date:2020-11-18
Release date:2021-11-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A pH-Dependent Conformational Switch Controls N. meningitidis ClpP Protease Function
To Be Published
7MPE
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Cryo-EM structure of the yeast cadmium factor 1 protein (Ycf1p)
Descriptor: Metal resistance protein YCF1
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2021-05-04
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of Ycf1p reveals the transmembrane domain TMD0 and the regulatory region of ABCC transporters.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MD2
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The F1 region of ammocidin-bound Saccharomyces cerevisiae ATP synthase
Descriptor: (3~{E},5~{Z},7~{E},9~{R},10~{S},11~{E},13~{E},15~{E},17~{R},18~{S},20~{S})-20-[(1~{R})-1-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},4~{S},5~{S},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4,6-dimethyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-4-oxidanyl-oxan-2-yl]oxy-3-methoxy-6-(3-methoxypropyl)-5-methyl-2,4-bis(oxidanyl)oxan-2-yl]ethyl]-5,18-dimethoxy-3,7,9,11,13,15-hexamethyl-10-[(2~{R},3~{S},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13,15-hexaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2021-04-03
Release date:2021-08-11
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7MD3
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The F1 region of apoptolidin-bound Saccharomyces cerevisiae ATP synthase
Descriptor: (3~{E},5~{E},7~{E},9~{R},10~{R},11~{E},13~{E},17~{S},18~{S},20~{S})-18-methoxy-20-[(~{R})-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(2~{R})-3-methoxy-2-[(2~{R},4~{S},5~{S},6~{S})-5-[(2~{S},4~{R},5~{R},6~{R})-4-methoxy-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4,6-dimethyl-4-oxidanyl-oxan-2-yl]oxy-propyl]-3,5-dimethyl-2,4-bis(oxidanyl)oxan-2-yl]-oxidanyl-methyl]-10-[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-methoxy-6-methyl-3,4-bis(oxidanyl)oxan-2-yl]oxy-3,5,7,9,13-pentamethyl-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13-pentaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2021-04-03
Release date:2021-08-11
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7Q21
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BU of 7q21 by Molmil
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
Descriptor: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate, (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Kovalova, T, Moe, A, Krol, S, Yanofsky, D.J, Bott, M, Sjostrand, D, Rubinstein, J.L, Hogbom, M, Brzezinski, P.
Deposit date:2021-10-22
Release date:2022-02-02
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The respiratory supercomplex from C. glutamicum.
Structure, 30, 2022
7RH6
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Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH7
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Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
7RH5
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BU of 7rh5 by Molmil
Mycobacterial CIII2CIV2 supercomplex, Inhibitor free
Descriptor: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate, (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate, ...
Authors:Di Trani, J.M, Yanofsky, D.J, Rubinstein, J.L.
Deposit date:2021-07-16
Release date:2021-08-04
Last modified:2021-11-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203).
Elife, 10, 2021
5FIL
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BU of 5fil by Molmil
Bovine mitochondrial ATP synthase state 3b
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-28
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5FIJ
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Bovine mitochondrial ATP synthase state 2c
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-28
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5FIK
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Bovine mitochondrial ATP synthase state 3a
Descriptor: ATP SYNTHASE F(0) COMPLEX SUBUNIT B1, MITOCHONDRIAL, ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, ...
Authors:Zhou, A, Rohou, A, Schep, D.G, Bason, J.V, Montgomery, M.G, Walker, J.E, Grigorieff, N, Rubinstein, J.L.
Deposit date:2015-09-28
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.
Elife, 4, 2015
5GAS
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BU of 5gas by Molmil
Thermus thermophilus V/A-ATPase, conformation 2
Descriptor: Archaeal/vacuolar-type H+-ATPase subunit I, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Schep, D.G, Zhao, J, Rubinstein, J.L.
Deposit date:2016-02-05
Release date:2016-03-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
7JG7
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Cryo-EM structure of bedaquiline-free Mycobacterium smegmatis ATP synthase rotational state 3 (backbone model)
Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit a, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
7JG8
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Cryo-EM structure of bedaquiline-saturated Mycobacterium smegmatis ATP synthase rotational state 1 (backbone model)
Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit a, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
7JGB
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Cryo-EM structure of bedaquiline-free Mycobacterium smegmatis ATP synthase FO region
Descriptor: ATP synthase subunit a, ATP synthase subunit b, ATP synthase subunit b-delta, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
5G4G
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Structure of the ATPgS-bound VAT complex
Descriptor: VCP-LIKE ATPASE
Authors:Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
Deposit date:2016-05-12
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
5G4F
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Structure of the ADP-bound VAT complex
Descriptor: VCP-LIKE ATPASE
Authors:Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
Deposit date:2016-05-12
Release date:2016-07-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
7JGA
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BU of 7jga by Molmil
Cryo-EM structure of bedaquiline-saturated Mycobacterium smegmatis ATP synthase rotational state 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021

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