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PDB: 144 results
5HM6
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BU of 5hm6 by Molmil
N-terminal domain of BfmR from Acinetobacter baumannii
Descriptor: BfmR
Authors:Roth, B.R, Davies, C.
Deposit date:2016-01-15
Release date:2017-01-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism.
J. Mol. Biol., 2018
7MTO
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BU of 7mto by Molmil
Crystal Structure of SET/I2PP2A/TAF-1Beta core
Descriptor: CALCIUM ION, Isoform 2 of Protein SET, MAGNESIUM ION
Authors:Roth, B.M, DePalma, R.M, Ogretmen, B.
Deposit date:2021-05-13
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.791 Å)
Cite:Crystal Structure of SET/I2PP2A/TAF-1Beta core
To Be Published
4PPX
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BU of 4ppx by Molmil
DNA Polymerase Beta E295K with Spiroiminodihydantoin in Templating Position
Descriptor: 5'-D(*CP*CP*GP*AP*CP*(SDH)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*G)-3', ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2014-02-27
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal Structure of DNA Polymerase beta with DNA Containing the Base Lesion Spiroiminodihydantoin in a Templating Position.
Biochemistry, 53, 2014
8GM7
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BU of 8gm7 by Molmil
Structure of apurinic/apyrimidinic DNA Lyase TK0353 from Thermococcus kodakarensis (Native Crystal Form)
Descriptor: GLYCEROL, SULFATE ION, TK0353
Authors:Eckenroth, B.E, Gardner, A.F, Doublie, S.
Deposit date:2023-03-24
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
8GM6
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BU of 8gm6 by Molmil
Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Selenomethionine)
Descriptor: GLYCEROL, SULFATE ION, TK0353
Authors:Eckenroth, B.E, Gardner, A.F, Doublie, S.
Deposit date:2023-03-24
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
6VJI
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BU of 6vji by Molmil
Structure of mammalian NEIL2 from Monodelphis domestica
Descriptor: Nei like DNA glycosylase 2, ZINC ION
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2020-01-16
Release date:2020-08-12
Last modified:2021-01-20
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Unique Structural Features of Mammalian NEIL2 DNA Glycosylase Prime Its Activity for Diverse DNA Substrates and Environments.
Structure, 29, 2021
8SYJ
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BU of 8syj by Molmil
Structure of apurinic/apyrimidinic DNA lyase TK0353 from Thermococcus kodakarensis (Iodide crystal form)
Descriptor: GLYCEROL, IODIDE ION, SULFATE ION, ...
Authors:Eckenroth, B.E, Gardner, A.F, Doublie, S.
Deposit date:2023-05-25
Release date:2023-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Thermococcus kodakarensis TK0353 is a novel AP lyase with a new fold.
J.Biol.Chem., 300, 2023
7RAG
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BU of 7rag by Molmil
Structure of the CwlD amidase from Clostridioides difficile in complex with the GerS lipoprotein
Descriptor: 1,2-ETHANEDIOL, Germination-specific N-acetylmuramoyl-L-alanine amidase, Autolysin, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2021-07-01
Release date:2021-09-08
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A lipoprotein allosterically activates the CwlD amidase during Clostridioides difficile spore formation.
Plos Genet., 17, 2021
6OLY
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BU of 6oly by Molmil
Full-length MthK channel at 3.1 angstrom resolution
Descriptor: CALCIUM ION, Calcium-gated potassium channel MthK
Authors:Rothberg, B.S.
Deposit date:2019-04-17
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.112 Å)
Cite:Molecular mechanism of a potassium channel gating through activation gate-selectivity filter coupling.
Nat Commun, 10, 2019
8TH9
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BU of 8th9 by Molmil
Structure of mammalian NEIL2 from Monodelphis domestica in complex with THF-containing DNA
Descriptor: DIMETHYL SULFOXIDE, DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*G)-3'), ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2023-07-14
Release date:2023-11-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and biochemical insights into NEIL2's preference for abasic sites.
Nucleic Acids Res., 51, 2023
5U8G
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BU of 5u8g by Molmil
DNA Polymerase Beta crystallized in PEG 400
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2016-12-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.166 Å)
Cite:Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta.
Biochemistry, 56, 2017
5U8I
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BU of 5u8i by Molmil
DNA Polymerase Beta S229L crystallized in PEG 400
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2016-12-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta.
Biochemistry, 56, 2017
5U8H
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BU of 5u8h by Molmil
DNA Polymerase Beta G231D crystallized in PEG 400
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2016-12-14
Release date:2017-04-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.155 Å)
Cite:Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta.
Biochemistry, 56, 2017
6BTF
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BU of 6btf by Molmil
DNA Polymerase Beta I260Q Ternary Complex
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2017-12-06
Release date:2018-09-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
6BTE
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BU of 6bte by Molmil
DNA Polymerase Beta I260Q Binary Complex
Descriptor: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2017-12-06
Release date:2018-09-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
6MW4
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BU of 6mw4 by Molmil
Structure of pseudoprotease CspC from Clostridioides difficile
Descriptor: Putative germination-specific protease, SULFATE ION
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2018-10-29
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The CspC pseudoprotease regulates germination of Clostridioides difficile spores in response to multiple environmental signals.
Plos Genet., 15, 2019
3DGH
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BU of 3dgh by Molmil
Crystal Structure of Drosophila Thioredoxin Reductase, C-terminal 8-residue truncation
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, Thioredoxin reductase 1, ...
Authors:Eckenroth, B.E, Hondal, R.J, Everse, S.J.
Deposit date:2008-06-13
Release date:2009-06-16
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.745 Å)
Cite:Crystal Structure of Drosophila Thioredoxin Reductase, C-terminal 8-residue truncation
To be Published
4M9H
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BU of 4m9h by Molmil
DNA Polymerase Beta E295K Soaked with dTTP
Descriptor: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2013-08-14
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.394 Å)
Cite:The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4M9N
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BU of 4m9n by Molmil
DNA Polymerase Beta E295K Soaked with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2013-08-14
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.275 Å)
Cite:The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
3DH9
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BU of 3dh9 by Molmil
Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin reductase 1
Authors:Eckenroth, B.E, Hondal, R.J, Everse, S.J.
Deposit date:2008-06-17
Release date:2009-06-16
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
To be Published
4M9G
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BU of 4m9g by Molmil
DNA Polymerase Beta E295K Binary Complex
Descriptor: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2013-08-14
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4M9L
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BU of 4m9l by Molmil
DNA Polymerase Beta E295K Soaked with dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA Downstream Strand, DNA Primer Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2013-08-14
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.091 Å)
Cite:The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
4M9J
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BU of 4m9j by Molmil
DNA Polymerase Beta E295K Soaked with dUMPNPP
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA Downstream Strand, ...
Authors:Eckenroth, B.E, Doublie, S.
Deposit date:2013-08-14
Release date:2013-10-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.038 Å)
Cite:The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection.
J.Biol.Chem., 288, 2013
3DGZ
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BU of 3dgz by Molmil
Crystal Structure of Mouse Mitochondrial Thioredoxin Reductase, C-terminal 3-residue truncation
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin reductase 2, [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
Authors:Eckenroth, B.E, Hondal, R.J, Everse, S.J.
Deposit date:2008-06-16
Release date:2009-06-16
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Mouse Mitochondrial Thioredoxin Reductase, C-terminal 3-residue truncation
To be Published
2NVK
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BU of 2nvk by Molmil
Crystal Structure of Thioredoxin Reductase from Drosophila melanogaster
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Thioredoxin Reductase
Authors:Eckenroth, B.E, Rould, M.A, Hondal, R.J, Everse, S.J.
Deposit date:2006-11-13
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Biochemical Studies Reveal Differences in the Catalytic Mechanisms of Mammalian and Drosophila melanogaster Thioredoxin Reductases.
Biochemistry, 46, 2007

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