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PDB: 60 results

8OZM
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BU of 8ozm by Molmil
In situ cryoEM structure of the Prototype Foamy Virus capsid, hexamer 1 localised reconstruction
Descriptor: Gag polyprotein
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZH
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BU of 8ozh by Molmil
In situ cryoEM structure of Prototype Foamy Virus Env trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZP
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BU of 8ozp by Molmil
In situ subtomogram average of Prototype Foamy Virus Env pentamer of trimers
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (11.9 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZQ
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BU of 8ozq by Molmil
In situ subtomogram average of Prototype Foamy Virus Env hexamer of trimers
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZJ
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BU of 8ozj by Molmil
In situ cryoEM structure of Prototype Foamy Virus Env dimer of trimers
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZL
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BU of 8ozl by Molmil
In situ cryoEM structure of the Prototype Foamy Virus capsid, pentamer localised reconstruction
Descriptor: Gag polyprotein
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8OZK
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BU of 8ozk by Molmil
In situ cryoEM structure of the Prototype Foamy Virus capsid, icosahedral map
Descriptor: Gag polyprotein
Authors:Calcraft, T, Nans, A, Rosenthal, P.B.
Deposit date:2023-05-09
Release date:2024-07-10
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Integrated cryoEM structure of a spumaretrovirus reveals cross-kingdom evolutionary relationships and the molecular basis for assembly and virus entry.
Cell, 187, 2024
8QXO
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BU of 8qxo by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State V - Depleted relaxed
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8QXN
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BU of 8qxn by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State IV - Depleted relaxed
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8QXL
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BU of 8qxl by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State II - Hemi-relaxed
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8QXK
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BU of 8qxk by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State I - Tense
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8QXM
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BU of 8qxm by Molmil
Cryo-EM structure of tetrameric human SAMHD1 State III - Relaxed
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8QXJ
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BU of 8qxj by Molmil
Cryo-EM structure of tetrameric human SAMHD1 with dApNHpp
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, ...
Authors:Acton, O.J, Sheppard, D, Rosenthal, P.B, Taylor, I.A.
Deposit date:2023-10-24
Release date:2024-05-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Platform-directed allostery and quaternary structure dynamics of SAMHD1 catalysis.
Nat Commun, 15, 2024
8ARH
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BU of 8arh by Molmil
In situ subtomogram average of Vaccinia virus (WR) D13 lattice, on immature virions
Descriptor: Scaffold protein D13
Authors:Calcraft, T, Hernandez-Gonzalez, M, Nans, A, Rosenthal, P.B, Way, M.
Deposit date:2022-08-16
Release date:2023-02-01
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (19.200001 Å)
Cite:A succession of two viral lattices drives vaccinia virus assembly.
Plos Biol., 21, 2023
6SSL
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BU of 6ssl by Molmil
Human endogenous retrovirus (HML2) mature capsid assembly, D6 capsule
Descriptor: Endogenous retrovirus group K member 24 Gag polyprotein
Authors:Acton, O.J.H, Taylor, I.A, Rosenthal, P.B.
Deposit date:2019-09-08
Release date:2020-01-01
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structural basis for Fullerene geometry in a human endogenous retrovirus capsid.
Nat Commun, 10, 2019
6SSJ
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BU of 6ssj by Molmil
Human endogenous retrovirus (HML2) mature capsid assembly, T=1 icosahedron
Descriptor: Endogenous retrovirus group K member 24 Gag polyprotein
Authors:Acton, O.J.H, Taylor, I.A, Rosenthal, P.B.
Deposit date:2019-09-08
Release date:2020-01-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural basis for Fullerene geometry in a human endogenous retrovirus capsid.
Nat Commun, 10, 2019
6SSM
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BU of 6ssm by Molmil
Human endogenous retrovirus (HML2) mature capsid assembly, T=3 icosahedron
Descriptor: Endogenous retrovirus group K member 24 Gag polyprotein
Authors:Acton, O.J.H, Taylor, I.A, Rosenthal, P.B.
Deposit date:2019-09-08
Release date:2020-01-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.34 Å)
Cite:Structural basis for Fullerene geometry in a human endogenous retrovirus capsid.
Nat Commun, 10, 2019
6SSK
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BU of 6ssk by Molmil
Human endogenous retrovirus (HML2) mature capsid assembly, D5 capsule
Descriptor: Endogenous retrovirus group K member 24 Gag polyprotein
Authors:Acton, O.J.H, Taylor, I.A, Rosenthal, P.B.
Deposit date:2019-09-08
Release date:2020-01-01
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Structural basis for Fullerene geometry in a human endogenous retrovirus capsid.
Nat Commun, 10, 2019
8R5I
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BU of 8r5i by Molmil
In situ structure of the Vaccinia virus (WR) A4/A10 palisade trimer in mature virions by flexible fitting into a cryoET map
Descriptor: Core protein A10, Core protein A4
Authors:Calcraft, T, Hernandez-Gonzalez, M, Nans, A, Rosenthal, P.B, Way, M.
Deposit date:2023-11-16
Release date:2024-01-10
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Palisade structure in intact vaccinia virions.
Mbio, 15, 2024
6YI5
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BU of 6yi5 by Molmil
In-situ structure of the trimeric HEF from influenza C by flexible fitting into a cryo-ET map.
Descriptor: Hemagglutinin-esterase-fusion glycoprotein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Halldorsson, S, Rosenthal, P.B.
Deposit date:2020-03-31
Release date:2021-03-24
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:In situ structure and organization of the influenza C virus surface glycoprotein.
Nat Commun, 12, 2021
6ZGI
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BU of 6zgi by Molmil
Furin Cleaved Spike Protein of SARS-CoV-2 in Closed Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wrobel, A.G, Benton, D.J, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2020-06-18
Release date:2020-07-01
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects.
Nat.Struct.Mol.Biol., 27, 2020
6ZGF
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BU of 6zgf by Molmil
Spike Protein of RaTG13 Bat Coronavirus in Closed Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wrobel, A.G, Benton, D.J, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2020-06-18
Release date:2020-07-01
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects.
Nat.Struct.Mol.Biol., 27, 2020
6ZGH
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BU of 6zgh by Molmil
Furin Cleaved Spike Protein of SARS-CoV-2 in Intermediate Conformation
Descriptor: Spike glycoprotein
Authors:Wrobel, A.G, Benton, D.J, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2020-06-18
Release date:2020-07-01
Last modified:2021-03-17
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects.
Nat.Struct.Mol.Biol., 27, 2020
7A97
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BU of 7a97 by Molmil
SARS-CoV-2 Spike Glycoprotein with 2 ACE2 Bound
Descriptor: Angiotensin-converting enzyme 2, Spike glycoprotein
Authors:Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2020-09-01
Release date:2020-09-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion.
Nature, 588, 2020
7A93
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BU of 7a93 by Molmil
SARS-CoV-2 Spike Glycoprotein with 2 RBDs Erect
Descriptor: Spike glycoprotein
Authors:Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2020-09-01
Release date:2020-09-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (5.9 Å)
Cite:Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion.
Nature, 588, 2020

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PDB entries from 2024-10-16

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