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PDB: 102 results

3NCL
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Crystal Structure of MT-SP1 bound to Benzamidine Phosphonate Inhibitor
Descriptor: FORMIC ACID, Suppressor of tumorigenicity 14 protein, phenyl (4-carbamimidoylbenzyl)phosphonate
Authors:Ray, M, Brown, C, Egea, P.
Deposit date:2010-06-04
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Peptide length and leaving-group sterics influence potency of Peptide phosphonate protease inhibitors.
Chem.Biol., 18, 2011
6ULM
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BU of 6ulm by Molmil
Crystal structure of human cadherin 17 EC1-2
Descriptor: CALCIUM ION, Cadherin-17
Authors:Gray, M.E, Sotomayor, M.
Deposit date:2019-10-08
Release date:2021-03-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the nonclassical cadherin-17 N-terminus and implications for its adhesive binding mechanism.
Acta Crystallogr.,Sect.F, 77, 2021
2RDU
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BU of 2rdu by Molmil
Crystal Structure of Human Glycolate Oxidase in Complex with Glyoxylate
Descriptor: FLAVIN MONONUCLEOTIDE, GLYOXYLIC ACID, Hydroxyacid oxidase 1
Authors:Murray, M.S, Holmes, R.P, Lowther, W.T.
Deposit date:2007-09-25
Release date:2008-02-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Active Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design.
Biochemistry, 47, 2008
2RDW
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Crystal Structure of Human Glycolate Oxidase in Complex with Sulfate
Descriptor: FLAVIN MONONUCLEOTIDE, Hydroxyacid oxidase 1, SULFATE ION
Authors:Murray, M.S, Holmes, R.P, Lowther, W.T.
Deposit date:2007-09-25
Release date:2008-02-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Active Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design.
Biochemistry, 47, 2008
2RDT
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BU of 2rdt by Molmil
Crystal Structure of Human Glycolate Oxidase (GO) in Complex with CDST
Descriptor: 5-(dodecylthio)-1H-1,2,3-triazole-4-carboxylic acid, FLAVIN MONONUCLEOTIDE, Hydroxyacid oxidase 1
Authors:Murray, M.S, Holmes, R.P, Lowther, W.T.
Deposit date:2007-09-25
Release date:2008-02-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Active Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design.
Biochemistry, 47, 2008
1XW4
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BU of 1xw4 by Molmil
Crystal Structure of Human Sulfiredoxin (Srx) in Complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Sulfiredoxin
Authors:Murray, M.S, Jonsson, T.J, Johnson, L.C, Poole, L.B, Lowther, W.T.
Deposit date:2004-10-29
Release date:2005-05-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the retroreduction of inactivated peroxiredoxins by human sulfiredoxin.
Biochemistry, 44, 2005
1XW3
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Crystal Structure of Human Sulfiredoxin (Srx)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, SULFIREDOXIN
Authors:Murray, M.S, Jonsson, T.J, Johnson, L.C, Poole, L.B, Lowther, W.T.
Deposit date:2004-10-29
Release date:2005-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for the retroreduction of inactivated peroxiredoxins by human sulfiredoxin.
Biochemistry, 44, 2005
3W80
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BU of 3w80 by Molmil
Crystal structure of dodecamer human insulin with double C-axis length of the hexamer 2 Zn insulin cell
Descriptor: Insulin, ZINC ION
Authors:Murayoshi, M, Sasaki, K, Sakabe, N, Sakabe, K.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of dodecamer insulin with double C-axis length of the hexamer 2 Zn insulin celll
To be Published
2DX1
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Crystal structure of RhoGEF protein Asef
Descriptor: Rho guanine nucleotide exchange factor 4
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-22
Release date:2007-01-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism
J.Biol.Chem., 282, 2007
2CYE
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BU of 2cye by Molmil
Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8
Descriptor: COENZYME A, Putative thioesterase, ZINC ION
Authors:Hosaka, T, Kato-Murayama, M, Murayama, K, Kishishita, S, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2006-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta Crystallogr.,Sect.D, 65, 2009
2CWP
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BU of 2cwp by Molmil
Crystal structure of MetRS related protein from Pyrococcus horikoshii
Descriptor: MetRS related protein
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-23
Release date:2005-12-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of MetRS related protein from Pyrococcus horikoshii
To be Published
2CWK
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Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
Descriptor: nucleoside-diphosphate kinase
Authors:Kato-Murayama, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-21
Release date:2005-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
To be Published
2DXA
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BU of 2dxa by Molmil
Crystal structure of trans editing enzyme ProX from E.coli
Descriptor: CHLORIDE ION, Protein ybaK
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-25
Release date:2007-02-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of trans editing enzyme ProX from E.coli
To be Published
2DYC
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BU of 2dyc by Molmil
Crystal structure of the N-terminal domain of mouse galectin-4
Descriptor: Galectin-4
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-08
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the N-terminal domain of mouse galectin-4
To be Published
2DXD
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BU of 2dxd by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nucleoside diphosphate kinase
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-25
Release date:2007-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
To be Published
2DYA
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BU of 2dya by Molmil
Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-08
Release date:2007-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
To be Published
2DXE
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BU of 2dxe by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with GDP
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-25
Release date:2007-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of nucleoside diphosphate kinase in complex with GDP
To be Published
2DXF
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BU of 2dxf by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
Descriptor: CHLORIDE ION, Nucleoside diphosphate kinase, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-25
Release date:2007-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of nucleoside diphosphate kinase in complex with GTP analog
To be Published
2DY9
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BU of 2dy9 by Molmil
Crystal structure of nucleoside diphosphate kinase in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-08
Release date:2007-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of nucleoside diphosphate kinase in complex with ADP
To be Published
2CV8
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BU of 2cv8 by Molmil
Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
Descriptor: CHLORIDE ION, tRNA-splicing endonuclease
Authors:Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-01
Release date:2005-12-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
To be Published
7EJL
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BU of 7ejl by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-2) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
7EJN
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BU of 7ejn by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-HKU1) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
7EJM
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BU of 7ejm by Molmil
Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-229E) spike protein
Descriptor: 9-mer peptide from the HCoV spike protein, Beta-2-microglobulin, MHC class I antigen
Authors:Murayama, K, Kato-Murayama, M, Shirouzu, M.
Deposit date:2021-04-02
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.
Commun Biol, 4, 2021
2CXA
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BU of 2cxa by Molmil
Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli
Descriptor: Leucyl/phenylalanyl-tRNA-protein transferase
Authors:Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-28
Release date:2005-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli
Protein Sci., 16, 2007
8I5L
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BU of 8i5l by Molmil
Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
Descriptor: Capsid protein, scFv fragment
Authors:Kato-Murayama, M, Murayama, K, Shirouzu, M.
Deposit date:2023-01-26
Release date:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural analysis of the GI.9 and GI.4 noroviruses by cryo-electron microscopy and X-ray crystallography reveals binding sites for human monoclonal antibody
To be published

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