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PDB: 45 results

1D5H
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Rnase s(f8a). mutant ribonucleasE S.
Descriptor: RNASE S, S PEPTIDE, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:1999-10-07
Release date:1999-10-20
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics.
Biochemistry, 39, 2000
5FCE
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The crystal structure of the ligand binding region of Serine-glutamate repeat protein A (SgrA) of Enterococcus faecium
Descriptor: LPXTG family cell surface protein Fms2
Authors:Ponnuraj, K, Nagarajan, R.
Deposit date:2015-12-15
Release date:2016-07-06
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:The crystal structure of the ligand-binding region of serine-glutamate repeat containing protein A (SgrA) of Enterococcus faecium reveals a new protein fold: functional characterization and insights into its adhesion function.
FEBS J., 283, 2016
1D5E
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The role of phenylalanine 8 in the stabilization of the S protein-S peptide interaction: Packing and cavities
Descriptor: RNASE S, S PEPTIDE, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:1999-10-07
Release date:1999-10-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics.
Biochemistry, 39, 2000
6IEP
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GAPDH of Streptococcus agalactiae
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Ponnuraj, K, Nagarajan, R.
Deposit date:2018-09-15
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of GAPDH of Streptococcus agalactiae and characterization of its interaction with extracellular matrix molecules
Microb. Pathog., 127, 2018
5WHW
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Using sound pulses to solve the crystal harvesting bottleneck
Descriptor: 1,2-ETHANEDIOL, BICINE, CALCIUM ION, ...
Authors:Soares, A.S, Brennan, H.M, Natarajan, R, McCarthy, L, Leroy, L.
Deposit date:2017-07-18
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Using sound pulses to solve the crystal-harvesting bottleneck.
Acta Crystallogr D Struct Biol, 74, 2018
7EPG
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Crystal structure of E.coli CcdB mutant S12G
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
7EPI
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Crystal structure of E.coli CcdB mutant S60E
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Goyal, P, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.931 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
7EPJ
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Crystal structure of E.coli CcdB mutant V46L
Descriptor: CHLORIDE ION, Toxin CcdB
Authors:Manjunath, K, Goyal, P, Varadarajan, R.
Deposit date:2021-04-26
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.354 Å)
Cite:Mechanistic insights into global suppressors of protein folding defects.
Plos Genet., 18, 2022
1J82
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Osmolyte Stabilization of RNase
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:2001-05-19
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states.
J.Biol.Chem., 276, 2001
1CJQ
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X-RAY CRYSTALLOGRAPHIC STUDIES OF THE DENATURATION OF THE DENATURATION OF RIBONUCLEASE S.
Descriptor: PROTEIN (RIBONUCLEASE S), SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:1999-04-19
Release date:1999-05-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-ray crystallographic studies of the denaturation of ribonuclease S.
Proteins, 36, 1999
1A19
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BARSTAR (FREE), C82A MUTANT
Descriptor: BARSTAR
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:1997-12-25
Release date:1998-04-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Discrepancies between the NMR and X-ray structures of uncomplexed barstar: analysis suggests that packing densities of protein structures determined by NMR are unreliable.
Biochemistry, 37, 1998
1J80
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Osmolyte Stabilization of RNase
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:2001-05-19
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states.
J.Biol.Chem., 276, 2001
1J7Z
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Osmolyte Stabilization of Ribonuclease
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:2001-05-19
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states.
J.Biol.Chem., 276, 2001
1J81
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BU of 1j81 by Molmil
Osmolyte Stabilization of RNase
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:2001-05-19
Release date:2001-06-06
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Osmolytes stabilize ribonuclease S by stabilizing its fragments S protein and S peptide to compact folding-competent states.
J.Biol.Chem., 276, 2001
1CJR
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X-RAY CRYSTALLOGRAPHIC STUDIES OF DENATURATION IN RIBONUCLEASE S
Descriptor: PROTEIN (RIBONUCLEASE S), SULFATE ION
Authors:Ratnaparkhi, G.S, Varadarajan, R.
Deposit date:1999-04-19
Release date:1999-05-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray crystallographic studies of the denaturation of ribonuclease S.
Proteins, 36, 1999
1Z3M
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Crystal structure of mutant Ribonuclease S (F8Nva)
Descriptor: Ribonuclease pancreatic, S-Peptide, S-protein, ...
Authors:Das, M, Vasudeva Rao, B, Ghosh, S, Varadarajan, R.
Deposit date:2005-03-14
Release date:2005-03-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Attempts to delineate the relative contributions of changes in hydrophobicity and packing to changes in stability of ribonuclease S mutants.
Biochemistry, 44, 2005
1Z3P
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X-Ray crystal structure of a mutant Ribonuclease S (M13Nva)
Descriptor: Ribonuclease pancreatic, S-Peptide, S-Protein, ...
Authors:Das, M, Rao, B.V, Ghosh, S, Varadarajan, R.
Deposit date:2005-03-14
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Attempts to delineate the relative contributions of changes in hydrophobicity and packing to changes in stability of ribonuclease S mutants.
Biochemistry, 44, 2005
1Z3L
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BU of 1z3l by Molmil
X-Ray Crystal Structure of a Mutant Ribonuclease S (F8Anb)
Descriptor: Ribonuclease pancreatic, S-Peptide, S-Protein, ...
Authors:Das, M, Vasudeva Rao, B, Ghosh, S, Varadarajan, R.
Deposit date:2005-03-14
Release date:2005-03-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Attempts to delineate the relative contributions of changes in hydrophobicity and packing to changes in stability of ribonuclease S mutants.
Biochemistry, 44, 2005
1RNV
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REFINEMENT OF THE CRYSTAL STRUCTURE OF RIBONUCLEASE S. COMPARISON WITH AND BETWEEN THE VARIOUS RIBONUCLEASE A STRUCTURES
Descriptor: RIBONUCLEASE S, SULFATE ION
Authors:Kim, E.E, Varadarajan, R, Wyckoff, H.W, Richards, F.M.
Deposit date:1992-02-19
Release date:1994-01-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Refinement of the crystal structure of ribonuclease S. Comparison with and between the various ribonuclease A structures.
Biochemistry, 31, 1992
1RNU
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REFINEMENT OF THE CRYSTAL STRUCTURE OF RIBONUCLEASE S. COMPARISON WITH AND BETWEEN THE VARIOUS RIBONUCLEASE A STRUCTURES
Descriptor: RIBONUCLEASE S, SULFATE ION
Authors:Kim, E.E, Varadarajan, R, Wyckoff, H.W, Richards, F.M.
Deposit date:1992-02-19
Release date:1994-01-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Refinement of the crystal structure of ribonuclease S. Comparison with and between the various ribonuclease A structures.
Biochemistry, 31, 1992
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