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PDB: 929 results

3GOG
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BU of 3gog by Molmil
Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine
Descriptor: 6-chloroguanine, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:Gilbert, S.D, Batey, R.T.
Deposit date:2009-03-19
Release date:2009-06-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs
Structure, 17, 2009
3GX3
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BU of 3gx3 by Molmil
Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (94-MER), ...
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
3J8F
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BU of 3j8f by Molmil
Cryo-EM reconstruction of poliovirus-receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Capsid protein VP1, ...
Authors:Strauss, M, Filman, D.J, Belnap, D.M, Cheng, N, Noel, R.T, Hogle, J.M.
Deposit date:2014-10-20
Release date:2015-02-11
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry.
J.Virol., 89, 2015
3GQX
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BU of 3gqx by Molmil
Pyrococcus Horikoshii NOP5 RNA Binding Domain from a twinned crystal form
Descriptor: IODIDE ION, NOP5P PROTEIN
Authors:Reyes, F.E, Hardin, J.W, Batey, R.T.
Deposit date:2009-03-24
Release date:2009-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Analysis of a Critical Interaction within the Archaeal Box C/D Small Ribonucleoprotein Complex
J.Biol.Chem., 284, 2009
3GX5
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BU of 3gx5 by Molmil
Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (94-MER), ...
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
3GQU
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BU of 3gqu by Molmil
Pyrococcus Horikoshii NOP5 RNA Binding Domain
Descriptor: IODIDE ION, NOP5P PROTEIN
Authors:Reyes, F.E, Hardin, J.W, Batey, R.T.
Deposit date:2009-03-24
Release date:2009-04-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Analysis of a Critical Interaction within the Archaeal Box C/D Small Ribonucleoprotein Complex
J.Biol.Chem., 284, 2009
3HTE
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BU of 3hte by Molmil
Crystal structure of nucleotide-free hexameric ClpX
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, SULFATE ION
Authors:Glynn, S.E, Martin, A, Baker, T.A, Sauer, R.T.
Deposit date:2009-06-11
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.026 Å)
Cite:Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine.
Cell(Cambridge,Mass.), 139, 2009
2M60
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BU of 2m60 by Molmil
Enterocin 7B
Descriptor: Enterocin JSB
Authors:Lohans, C.T, Towle, K.M, Miskolzie, M, McKay, R.T, van Belkum, M.J, McMullen, L.M, Vederas, J.C.
Deposit date:2013-03-18
Release date:2013-06-12
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Solution Structures of the Linear Leaderless Bacteriocins Enterocin 7A and 7B Resemble Carnocyclin A, a Circular Antimicrobial Peptide
Biochemistry, 52, 2013
2M5Z
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BU of 2m5z by Molmil
Enterocin 7A
Descriptor: Enterocin JSA
Authors:Lohans, C.T, Towle, K.M, Miskolzie, M, McKay, R.T, van Belkum, M.J, McMullen, L.M, Vederas, J.C.
Deposit date:2013-03-16
Release date:2013-06-12
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Solution Structures of the Linear Leaderless Bacteriocins Enterocin 7A and 7B Resemble Carnocyclin A, a Circular Antimicrobial Peptide
Biochemistry, 52, 2013
2OH4
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BU of 2oh4 by Molmil
Crystal structure of Vegfr2 with a benzimidazole-urea inhibitor
Descriptor: METHYL (5-{4-[({[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-1H-BENZIMIDAZOL-2-YL)CARBAMATE, SULFATE ION, Vascular endothelial growth factor receptor 2
Authors:Nolte, R.T, Wang, L.
Deposit date:2007-01-09
Release date:2007-09-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of Novel Benzimidazoles as Potent Inhibitors of TIE-2 and VEGFR-2 Tyrosine Kinase Receptors.
J.Med.Chem., 50, 2007
2NPF
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BU of 2npf by Molmil
Structure of eEF2 in complex with moriniafungin
Descriptor: (1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7R,9S,10R)-2-(7-CARBOXYHEPTYL)-6-HYDROXY-10-METHOXY-9-METHYL-3-OXO-1,4,8-TRIOXASPIRO[4 .5]DEC-7-YL]OXY}METHYL)-9-FORMYL-13-ISOPROPYL-5-METHYLTETRACYCLO[7.4.0.02,11.04.8]TRIDEC-12-ENE-1-CARBOXYLIC ACID, Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE
Authors:Soe, R, Mosley, R.T, Andersen, G.R.
Deposit date:2006-10-27
Release date:2006-11-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2
J.Biol.Chem., 282, 2007
2OG0
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BU of 2og0 by Molmil
Crystal Structure of the Lambda Xis-DNA complex
Descriptor: 5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3', Excisionase
Authors:Papagiannis, C.V, Sam, M.D, Abbani, M.A, Cascio, D, Yoo, D, Clubb, R.T, Johnson, R.C.
Deposit date:2007-01-04
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fis targets assembly of the xis nucleoprotein filament to promote excisive recombination by phage lambda.
J.Mol.Biol., 367, 2007
2MP2
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BU of 2mp2 by Molmil
Solution structure of SUMO dimer in complex with SIM2-3 from RNF4
Descriptor: E3 ubiquitin-protein ligase RNF4, Small ubiquitin-related modifier 3
Authors:Xu, Y, Plechanovov, A, Simpson, P, Marchant, J, Leidecker, O, Sebastian, K, Hay, R.T, Matthews, S.J.
Deposit date:2014-05-09
Release date:2014-07-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4.
Nat Commun, 5, 2014
2LA0
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BU of 2la0 by Molmil
Trn- peptide of the two-component bacteriocin Thuricin CD
Descriptor: Uncharacterized protein
Authors:Sit, C.S, Mckay, R.T, Hill, C, Ross, R.P, Vederas, J.C.
Deposit date:2011-02-27
Release date:2012-01-11
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The 3D structure of thuricin CD, a two-component bacteriocin with cysteine sulfur to alpha-carbon cross-links.
J.Am.Chem.Soc., 133, 2011
2LBZ
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BU of 2lbz by Molmil
Thurincin H
Descriptor: Thuricin17
Authors:Sit, C.S, van Belkum, M.J, Mckay, R.T, Worobo, R.W, Vederas, J.C.
Deposit date:2011-04-10
Release date:2012-01-18
Last modified:2018-08-22
Method:SOLUTION NMR
Cite:The 3D solution structure of thurincin H, a bacteriocin with four sulfur to alpha-carbon crosslinks.
Angew.Chem.Int.Ed.Engl., 50, 2011
2LN7
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BU of 2ln7 by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for the catalytic domain of B. anthracis SrtD
Descriptor: LPXTG-site transpeptidase family protein
Authors:Robson, S.A, Weiner, E.M, Clubb, R.T.
Deposit date:2011-12-19
Release date:2012-11-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the Sortase Required for Efficient Production of Infectious Bacillus anthracis Spores.
Biochemistry, 51, 2012
2KID
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BU of 2kid by Molmil
Solution Structure of the S. Aureus Sortase A-substrate Complex
Descriptor: (PHQ)LPA(B27) peptide, CALCIUM ION, Sortase
Authors:Suree, N, Liew, C.K, Villareal, V.A, Thieu, W, Fadeev, E.A, Clemens, J.J, Jung, M.E, Clubb, R.T.
Deposit date:2009-05-01
Release date:2009-07-21
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:The structure of the Staphylococcus aureus sortase-substrate complex reveals how the universally conserved LPXTG sorting signal is recognized.
J.Biol.Chem., 284, 2009
2K78
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BU of 2k78 by Molmil
Solution Structure of the IsdC NEAT domain bound to Zinc Protoporphyrin
Descriptor: Iron-regulated surface determinant protein C, PROTOPORPHYRIN IX CONTAINING ZN
Authors:Villareal, V.A, Pilpa, R.M, Robson, S.A, Fadeev, E.A, Clubb, R.T.
Deposit date:2008-08-06
Release date:2008-08-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The IsdC Protein from Staphylococcus aureus Uses a Flexible Binding Pocket to Capture Heme.
J.Biol.Chem., 283, 2008
2L9X
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BU of 2l9x by Molmil
Trn- peptide of the two-component bacteriocin Thuricin CD
Descriptor: Uncharacterized protein
Authors:Sit, C.S, Mckay, R.T, Hill, C, Ross, R.P, Vederas, J.C.
Deposit date:2011-02-25
Release date:2012-01-11
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:The 3D structure of thuricin CD, a two-component bacteriocin with cysteine sulfur to alpha-carbon cross-links.
J.Am.Chem.Soc., 133, 2011
2LHR
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BU of 2lhr by Molmil
Solution structure of Staphylococcus aureus IsdH linker domain
Descriptor: Iron-regulated surface determinant protein H
Authors:Spirig, T, Clubb, R.T, Malmirchegini, G.R, Robson, S.A.
Deposit date:2011-08-12
Release date:2012-11-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Staphylococcus aureus Uses a Novel Multidomain Receptor to Break Apart Human Hemoglobin and Steal Its Heme.
J.Biol.Chem., 288, 2013
2POB
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BU of 2pob by Molmil
PPARgamma Ligand binding domain complexed with a farglitazar analogue gw4709
Descriptor: GLYCEROL, N-[(2S)-2-[(2-BENZOYLPHENYL)AMINO]-3-{4-[2-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)ETHOXY]PHENYL}PROPYL]ACETAMIDE, Peroxisome proliferator-activated receptor gamma
Authors:Nolte, R.T.
Deposit date:2007-04-26
Release date:2008-03-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cocrystal structure guided array synthesis of PPARgamma inverse agonists
BIOORG.MED.CHEM.LETT., 17, 2007
2PRG
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BU of 2prg by Molmil
LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
Descriptor: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL), NUCLEAR RECEPTOR COACTIVATOR SRC-1, ...
Authors:Nolte, R.T, Wisely, G.B, Milburn, M.V.
Deposit date:1998-08-14
Release date:1999-07-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ligand binding and co-activator assembly of the peroxisome proliferator-activated receptor-gamma.
Nature, 395, 1998
2PXD
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BU of 2pxd by Molmil
Variant 1 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle
Descriptor: 4.5 S RNA, COBALT HEXAMMINE(III), Signal recognition particle protein
Authors:Keel, A.Y, Rambo, R.P, Batey, R.T, Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2PXP
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BU of 2pxp by Molmil
Variant 13 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle
Descriptor: 4.5 S RNA, COBALT HEXAMMINE(III), Signal recognition particle protein
Authors:Keel, A.Y, Rambo, R.P, Batey, R.T, Kieft, J.S.
Deposit date:2007-05-14
Release date:2007-08-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A General Strategy to Solve the Phase Problem in RNA Crystallography.
Structure, 15, 2007
2KW8
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BU of 2kw8 by Molmil
Solution Structure of Bacillus anthracis Sortase A (SrtA) Transpeptidase
Descriptor: LPXTG-site transpeptidase family protein
Authors:Weiner, E.M, Robson, S.A, Marohn, M, Clubb, R.T.
Deposit date:2010-03-31
Release date:2010-05-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Sortase A enzyme that attaches proteins to the cell wall of Bacillus anthracis contains an unusual active site architecture.
J.Biol.Chem., 285, 2010

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