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PDB: 2930 件

2G89
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L. casei thymidylate synthase Y261A in complex with substrate, dUMP
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, thymidylate synthase
著者Finer-Moore, J.S, Stroud, R.M.
登録日2006-03-02
公開日2006-03-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The role of protein dynamics in thymidylate synthase catalysis: variants of conserved 2'-deoxyuridine 5'-monophosphate (dUMP)-binding Tyr-261
Biochemistry, 45, 2006
2GFA
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double tudor domain complex structure
分子名称: Jumonji domain-containing protein 2A, peptide
著者Huang, Y, Fang, J, Bedford, M.T, Zhang, Y, Xu, R.M.
登録日2006-03-21
公開日2006-05-02
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A
Science, 312, 2006
2MFN
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SOLUTION NMR STRUCTURE OF LINKED CELL ATTACHMENT MODULES OF MOUSE FIBRONECTIN CONTAINING THE RGD AND SYNERGY REGIONS, 10 STRUCTURES
分子名称: FIBRONECTIN
著者Copie, V, Tomita, Y, Akiyama, S.K, Aota, S, Yamada, K.M, Venable, R.M, Pastor, R.W, Krueger, S, Torchia, D.A.
登録日1998-02-11
公開日1998-04-29
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and dynamics of linked cell attachment modules of mouse fibronectin containing the RGD and synergy regions: comparison with the human fibronectin crystal structure.
J.Mol.Biol., 277, 1998
2GF1
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SOLUTION STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR 1: A NUCLEAR MAGNETIC RESONANCE AND RESTRAINED MOLECULAR DYNAMICS STUDY
分子名称: INSULIN-LIKE GROWTH FACTOR I
著者Cooke, R.M, Harvey, T.S, Campbell, I.D.
登録日1991-01-23
公開日1993-04-15
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Solution structure of human insulin-like growth factor 1: a nuclear magnetic resonance and restrained molecular dynamics study.
Biochemistry, 30, 1991
6MHN
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Photoactive Yellow Protein with covalently bound 3-chloro-4-hydroxycinnamic acid chromophore
分子名称: (2E)-3-(3-chloro-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-18
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
2GSM
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Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides
分子名称: CADMIUM ION, CALCIUM ION, COPPER (II) ION, ...
著者Qin, L, Hiser, C, Mulichak, A, Garavito, R.M, Ferguson-Miller, S.
登録日2006-04-26
公開日2006-10-10
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1BOO
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PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)
分子名称: PROTEIN (N-4 CYTOSINE-SPECIFIC METHYLTRANSFERASE PVU II), S-ADENOSYL-L-HOMOCYSTEINE
著者Gong, W, O'Gara, M, Blumenthal, R.M, Cheng, X.
登録日1998-07-31
公開日1998-08-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment.
Nucleic Acids Res., 25, 1997
6MHI
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Photoactive Yellow Protein with covalently bound 3,5-dichloro-4-hydroxycinnamic acid chromophore
分子名称: (2E)-3-(3,5-dichloro-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-18
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
7KRR
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Structural impact on SARS-CoV-2 spike protein by D614G substitution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, J, Cai, Y.F, Xiao, T.S, Lu, J.M, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Volloch, S.R, Zhu, H.S, Woosley, A.N, Yang, W, Sliz, P, Chen, B.
登録日2020-11-20
公開日2021-03-24
最終更新日2021-05-12
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural impact on SARS-CoV-2 spike protein by D614G substitution.
Science, 372, 2021
7KRS
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Structural impact on SARS-CoV-2 spike protein by D614G substitution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, J, Cai, Y.F, Xiao, T.S, Lu, J.M, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Volloch, S.R, Zhu, H.S, Woosley, A.N, Yang, W, Sliz, P, Chen, B.
登録日2020-11-20
公開日2021-03-24
最終更新日2021-05-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural impact on SARS-CoV-2 spike protein by D614G substitution.
Science, 372, 2021
7KRQ
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Structural impact on SARS-CoV-2 spike protein by D614G substitution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, J, Cai, Y.F, Xiao, T.S, Lu, J.M, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Volloch, S.R, Zhu, H.S, Woosley, A.N, Yang, W, Sliz, P, Chen, B.
登録日2020-11-20
公開日2021-03-31
最終更新日2021-05-12
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Structural impact on SARS-CoV-2 spike protein by D614G substitution.
Science, 372, 2021
6MKT
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Photoactive Yellow Protein with 3-chlorotyrosine substituted at position 42
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-26
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
6MQF
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Myotoxin II from Bothrops moojeni complexed with Acetylsalicylic acid
分子名称: 2-(ACETYLOXY)BENZOIC ACID, Basic phospholipase A2 homolog 2, DIMETHYL SULFOXIDE
著者Salvador, G.H.M, Fontes, M.R.M.
登録日2018-10-09
公開日2019-03-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.693 Å)
主引用文献Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches.
Sci Rep, 9, 2019
7XAY
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Crystal structure of Hat1-Hat2-Asf1-H3-H4
分子名称: COENZYME A, Histone H3, Histone H4, ...
著者Yue, Y, Yang, W.S, Xu, R.M.
登録日2022-03-19
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Topography of histone H3-H4 interaction with the Hat1-Hat2 acetyltransferase complex.
Genes Dev., 36, 2022
6MMD
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Photoactive Yellow Protein with 3,5-dichlorotyrosine substituted at position 42
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-30
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.228 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
6MQD
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Myotoxin II from Bothrops moojeni complexed with Rosmarinic Acid
分子名称: (2R)-3-(3,4-dihydroxyphenyl)-2-{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}propanoic acid, Basic phospholipase A2 homolog 2
著者Salvador, G.H.M, Fontes, M.R.M.
登録日2018-10-09
公開日2019-03-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches.
Sci Rep, 9, 2019
2MWK
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Family 1 Carbohydrate-Binding Module from Trichoderma reesei Cel7A with O-mannose residues at Thr1, Ser3, and Ser14
分子名称: Exoglucanase 1, alpha-D-mannopyranose
著者Happs, R.M, Chen, L, Resch, M.G, Davis, M.F, Beckham, G.T, Tan, Z, Crowley, M.F.
登録日2014-11-12
公開日2015-09-02
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献O-glycosylation effects on family 1 carbohydrate-binding module solution structures.
Febs J., 282, 2015
2MWJ
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Solution structure of Family 1 Carbohydrate-Binding Module from Trichoderma reesei Cel7A with O-mannose residues at Thr1 and Ser3
分子名称: Exoglucanase 1, alpha-D-mannopyranose
著者Happs, R.M, Chen, L, Resch, M.G, Davis, M.F, Beckham, G.T, Tan, Z, Crowley, M.F.
登録日2014-11-12
公開日2015-09-02
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献O-glycosylation effects on family 1 carbohydrate-binding module solution structures.
Febs J., 282, 2015
6NCG
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Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to pyridin-benzenesulfonamide inhibitor
分子名称: 4-[6-amino-5-(3,5-difluoro-4-hydroxyphenyl)pyridin-3-yl]benzene-1-sulfonamide, SULFATE ION, Serine/threonine-protein kinase VRK2
著者dos Reis, C.V, Chiodi, C.G, de Souza, G.P, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Counago, R.M, Massirer, K.B, Elkins, J.M, Arruda, P, Edwards, A.M, Structural Genomics Consortium (SGC)
登録日2018-12-11
公開日2019-01-16
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to pyridin-benzenesulfonamide inhibitor
To Be Published
1AZ5
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UNLIGANDED SIV PROTEASE STRUCTURE IN AN "OPEN" CONFORMATION
分子名称: SIV PROTEASE
著者Rose, R.B, Craik, C.S, Stroud, R.M.
登録日1997-11-25
公開日1998-05-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Domain flexibility in retroviral proteases: structural implications for drug resistant mutations.
Biochemistry, 37, 1998
6NNR
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high-resolution structure of wild-type E. coli thymidylate synthase
分子名称: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-deoxy-5'-uridylic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Stroud, R.M, Finer-Moore, J.
登録日2019-01-15
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Mg2+ binds to the surface of thymidylate synthase and affects hydride transfer at the interior active site.
J. Am. Chem. Soc., 135, 2013
2NS1
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Crystal structure of the e. coli ammonia channel AMTB complexed with the signal transduction protein GLNK
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Ammonia channel, ...
著者Gruswitz, F, O'Connell III, J, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
登録日2006-11-02
公開日2006-12-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.962 Å)
主引用文献Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96
Proc.Natl.Acad.Sci.USA, 104, 2007
2O1U
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Structure of full length GRP94 with AMP-PNP bound
分子名称: Endoplasmin, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Dollins, D.E, Warren, J.J, Immormino, R.M, Gewirth, D.T.
登録日2006-11-29
公開日2007-10-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of GRP94-Nucleotide Complexes Reveal Mechanistic Differences between the hsp90 Chaperones.
Mol.Cell, 28, 2007
2O1V
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Structure of full length GRP94 with ADP bound
分子名称: ADENOSINE-5'-DIPHOSPHATE, Endoplasmin, MAGNESIUM ION
著者Dollins, D.E, Warren, J.J, Immormino, R.M, Gewirth, D.T.
登録日2006-11-29
公開日2007-10-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structures of GRP94-Nucleotide Complexes Reveal Mechanistic Differences between the hsp90 Chaperones.
Mol.Cell, 28, 2007
2O9D
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Crystal Structure of AqpZ mutant T183C.
分子名称: Aquaporin Z, octyl alpha-L-altropyranoside, octyl beta-D-galactopyranoside
著者Savage, D.F, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
登録日2006-12-13
公開日2007-02-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of aquaporin inhibition by mercury.
J.Mol.Biol., 368, 2007

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