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PDB: 23 件
7BG1
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BU of 7bg1 by Molmil
Structure of anti-FLAG M2 Fab domain remodeled based on proteomic sequencing
分子名称: CHLORIDE ION, SULFATE ION, anti-FLAG M2 heavy chain, ...
著者Pronker, M.F, Snijder, J.
登録日2021-01-05
公開日2021-07-21
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme.
J.Proteome Res., 20, 2021
5AMO
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BU of 5amo by Molmil
Structure of a mouse Olfactomedin-1 disulfide-linked dimer of the Olfactomedin domain and part of the coiled coil
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Pronker, M.F, Bos, T.G.A.A, Sharp, T.H, Thies-Weesie, D.M, Janssen, B.J.C.
登録日2015-03-11
公開日2015-04-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Olfactomedin-1 Has a V-Shaped Disulfide-Linked Tetrameric Structure.
J.Biol.Chem., 290, 2015
6QHJ
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High-resolution crystal structure of calcium- and sodium-bound mouse Olfactomedin-1 beta-propeller domain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
著者Pronker, M.F, van den Hoek, H.G, Janssen, B.J.C.
登録日2019-01-16
公開日2019-09-11
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Design and structural characterisation of olfactomedin-1 variants as tools for functional studies.
BMC Mol Cell Biol, 20, 2019
6QM3
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BU of 6qm3 by Molmil
Crystal structure of a calcium- and sodium-bound mouse Olfactomedin-1 disulfide-linked dimer of the Olfactomedin domain and part of coiled coil
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CACODYLATE ION, ...
著者Pronker, M.F, van den Hoek, H.G, Janssen, B.J.C.
登録日2019-02-01
公開日2019-09-11
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Design and structural characterisation of olfactomedin-1 variants as tools for functional studies.
BMC Mol Cell Biol, 20, 2019
5LFV
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BU of 5lfv by Molmil
Crystal structure of glycosylated Myelin-associated glycoprotein (MAG) Ig1-3 with soaked trisaccharide ligand
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Myelin-associated glycoprotein, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2016-07-04
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of myelin-associated glycoprotein adhesion and signalling.
Nat Commun, 7, 2016
5LF5
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Myelin-associated glycoprotein (MAG) deglycosylated full extracellular domain with co-purified ligand
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Myelin-associated glycoprotein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2016-06-30
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structural basis of myelin-associated glycoprotein adhesion and signalling.
Nat Commun, 7, 2016
5LFR
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Crystal structure of glycosylated Myelin-associated glycoprotein (MAG) Ig1-3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Myelin-associated glycoprotein, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2016-07-04
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural basis of myelin-associated glycoprotein adhesion and signalling.
Nat Commun, 7, 2016
5LFU
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Myelin-associated glycoprotein (MAG) glycosylated and lysine-methylated full extracellular domain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Myelin-associated glycoprotein, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2016-07-04
公開日2016-12-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (4.3 Å)
主引用文献Structural basis of myelin-associated glycoprotein adhesion and signalling.
Nat Commun, 7, 2016
8OHN
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BU of 8ohn by Molmil
Human Coronavirus HKU1 spike glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Pronker, M.F, Hurdiss, D.L.
登録日2023-03-21
公開日2023-08-02
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Sialoglycan binding triggers spike opening in a human coronavirus.
Nature, 624, 2023
8OPN
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Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (1-up state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-8)-N-acetyl-alpha-neuraminic acid, ...
著者Pronker, M.F, Creutznacher, R, Hurdiss, D.L.
登録日2023-04-07
公開日2023-08-02
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Sialoglycan binding triggers spike opening in a human coronavirus.
Nature, 624, 2023
8OPO
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BU of 8opo by Molmil
Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (3-up state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-8)-N-acetyl-alpha-neuraminic acid, ...
著者Pronker, M.F, Creutznacher, R, Hurdiss, D.L.
登録日2023-04-07
公開日2023-08-02
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Sialoglycan binding triggers spike opening in a human coronavirus.
Nature, 624, 2023
8OPM
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Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-8)-N-acetyl-alpha-neuraminic acid, ...
著者Pronker, M.F, Creutznacher, R, Hurdiss, D.L.
登録日2023-04-07
公開日2023-08-02
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Sialoglycan binding triggers spike opening in a human coronavirus.
Nature, 624, 2023
5O0M
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BU of 5o0m by Molmil
Deglycosylated Nogo Receptor with native disulfide structure 3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Reticulon-4 receptor
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0L
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Deglycosylated Nogo Receptor with native disulfide structure 2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Reticulon-4 receptor
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.511 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0P
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Deglycosylated Nogo Receptor with native disulfide structure 6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Reticulon-4 receptor, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0N
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BU of 5o0n by Molmil
Deglycosylated Nogo Receptor with native disulfide structure 4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Reticulon-4 receptor, ...
著者Pronker, M.F, Tas, R.P, Vlieg, H.C, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0Q
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Deglycosylated Nogo Receptor with native disulfide structure
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0K
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BU of 5o0k by Molmil
Deglycosylated Nogo Receptor with native disulfide structure
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0R
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BU of 5o0r by Molmil
Deglycosylated Nogo Receptor with native disulfide structure
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-11-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5O0O
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Deglycosylated Nogo Receptor with native disulfide structure 5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
著者Pronker, M.F, Janssen, B.J.C.
登録日2017-05-16
公開日2017-10-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
8RMO
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BU of 8rmo by Molmil
Crystal structure of anti-FLAG M2 Fab fragment bound to FLAG-tag peptide epitope
分子名称: CHLORIDE ION, FLAG-tag, anti-FLAG M2 heavy chain, ...
著者Beugelink, J.W, Janssen, B.J.C, Pronker, M.F.
登録日2024-01-08
公開日2024-04-03
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.163 Å)
主引用文献Structural basis for recognition of the FLAG-tag by anti-FLAG M2.
J.Mol.Biol., 2024
6Y3Y
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BU of 6y3y by Molmil
Human Coronavirus HKU1 Haemagglutinin-Esterase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin-esterase, ...
著者Hurdiss, D.L, Drulyte, I, Pronker, M.F.
登録日2020-02-19
公開日2020-04-08
最終更新日2020-09-30
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Cryo-EM structure of coronavirus-HKU1 haemagglutinin esterase reveals architectural changes arising from prolonged circulation in humans.
Nat Commun, 11, 2020
8P6I
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BU of 8p6i by Molmil
Crystal structure of the 139H2 Fab fragment bound to Muc1 peptide epitope
分子名称: 139H2 HC, 139H2 LC, Mucin-1
著者Beugelink, J.W, Peng, W, Siborova, M, Pronker, M.F, Snijder, J, Janssen, B.J.C.
登録日2023-05-26
公開日2024-04-03
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Reverse-engineering the anti-MUC1 antibody 139H2 by mass spectrometry-based de novo sequencing.
Life Sci Alliance, 7, 2024

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