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PDB: 37 results

4W7U
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BU of 4w7u by Molmil
Crystal structure of XacCel5A in the native form
Descriptor: CACODYLATE ION, Cellulase
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of XacCel5A in the native form
To Be Published
4W7W
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BU of 4w7w by Molmil
High-resolution structure of XacCel5A in complex with cellopentaose
Descriptor: Cellulase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:High-resolution structure of XacCel5A in complex with cellopentaose
To Be Published
4W7V
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BU of 4w7v by Molmil
Crystal structure of XacCel5A in complex with cellobiose
Descriptor: Cellulase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Crystal structure of XacCel5A in complex with cellobiose
To Be Published
4M1R
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BU of 4m1r by Molmil
Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cellulase 5
Authors:Paiva, J.H, Alvarez, T.M, Cairo, J.P, Paixao, D.A, Almeida, R.A, Tonoli, C.C.C, Ruiz, D.M, Ruller, R, Santos, C.R, Squina, F.M, Murakami, M.T.
Deposit date:2013-08-03
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
5HOS
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BU of 5hos by Molmil
Crystal structure of the endo-beta-1,4-glucanase Xac0029 from Xanthomonas axonopodis pv. citri
Descriptor: Cellulase, SULFATE ION
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2016-01-19
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the endo-beta-1,4-glucanase Xac0029 from Xanthomonas axonopodis pv. citri
To Be Published
5HPC
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BU of 5hpc by Molmil
Structure of XacCel5A crystallized in the space group P41212
Descriptor: Cellulase
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2016-01-20
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of XacCel5A crystallized in the space group P41212
To Be Published
5HNN
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BU of 5hnn by Molmil
Crystal structure of the endo-beta-1,4-glucanase (Xac0030) from Xanthomonas axonopodis pv. citri with the triple mutation His174Trp, Tyr211Ala and Lys227Arg.
Descriptor: Cellulase, GLYCEROL
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2016-01-18
Release date:2017-01-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of the endo-beta-1,4-glucanase (Xac0030) from Xanthomonas axonopodis pv. citri with the triple mutation His174Trp, Tyr211Ala and Lys227Arg.
To Be Published
2L8A
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BU of 2l8a by Molmil
Structure of a novel CBM3 lacking the calcium-binding site
Descriptor: Endoglucanase
Authors:Paiva, J.H, Meza, A.N, Sforca, M.L, Navarro, R.Z, Neves, J.L, Santos, C.R, Murakami, M.T, Zeri, A.C.
Deposit date:2011-01-07
Release date:2011-12-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168.
Biochem.J., 441, 2012
3NN8
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BU of 3nn8 by Molmil
Crystal structure of engineered antibody fragment based on 3D5
Descriptor: Engineered scFv
Authors:Lieberman, R.L, Maynard, J.A, Drury, J.E, Pai, J, Culver, J.A.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Peptide-binding single chain Antibody fragment (SCFV) chaperones for protein co-crystallization
To be Published
4NKM
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BU of 4nkm by Molmil
Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
4NKD
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BU of 4nkd by Molmil
Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.303 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
4NKO
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BU of 4nko by Molmil
Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.496 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
2FD0
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BU of 2fd0 by Molmil
HIV-1 DIS kissing-loop in complex with lividomycin
Descriptor: (2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL, CHLORIDE ION, HIV-1 DIS RNA, ...
Authors:Ennifar, E, Paillart, J.C, Marquet, R, Dumas, P.
Deposit date:2005-12-13
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.
Nucleic Acids Res., 34, 2006
2FCX
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BU of 2fcx by Molmil
HIV-1 DIS kissing-loop in complex with neamine
Descriptor: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside, CHLORIDE ION, HIV-1 DIS RNA, ...
Authors:Ennifar, E, Paillart, J.C, Marquet, R, Dumas, P.
Deposit date:2005-12-13
Release date:2006-05-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.
Nucleic Acids Res., 34, 2006
5CG9
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BU of 5cg9 by Molmil
NgTET1 in complex with 5mC DNA in space group P3221
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DNA (5'-D(*TP*GP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*G)-3'), ...
Authors:Hashimoto, H, Pais, J.E, Dai, N, Zhang, X, Zheng, Y, Cheng, X.
Deposit date:2015-07-09
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.
Nucleic Acids Res., 43, 2015
5CG8
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BU of 5cg8 by Molmil
NgTET1 in complex with 5hmC DNA
Descriptor: 2-OXOGLUTARIC ACID, DNA (5'-D(*AP*GP*AP*AP*TP*TP*CP*CP*GP*TP*TP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*(5HC)P*GP*GP*AP*AP*TP*TP*CP*T)-3'), ...
Authors:Hashimoto, H, Pais, J.E, Dai, N, Zhang, X, Zheng, Y, Cheng, X.
Deposit date:2015-07-09
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA.
Nucleic Acids Res., 43, 2015
4LT5
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BU of 4lt5 by Molmil
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Descriptor: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ...
Authors:Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X.
Deposit date:2013-07-23
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
Nature, 506, 2014
7AER
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BU of 7aer by Molmil
Rebuilt and re-refined PDB entry 5yep: tri-AMPylated Shewanella oneidensis HEPN toxin in complex with MNT antitoxin
Descriptor: ADENOSINE MONOPHOSPHATE, Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
Authors:Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V.
Deposit date:2020-09-18
Release date:2020-12-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.
Mol.Cell, 80, 2020
7AE9
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BU of 7ae9 by Molmil
Crystal structure of mono-AMPylated HEPN(R46E) toxin in complex with MNT antitoxin
Descriptor: 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE, HEPN toxin, MNT ANTITOXIN
Authors:Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V.
Deposit date:2020-09-17
Release date:2020-12-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.
Mol.Cell, 80, 2020
7AE6
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BU of 7ae6 by Molmil
Crystal structure of di-AMPylated HEPN(R102A) toxin
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, HEPN toxin
Authors:Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V.
Deposit date:2020-09-17
Release date:2020-12-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.
Mol.Cell, 80, 2020
7AE8
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BU of 7ae8 by Molmil
Crystal structure of HEPN(R102A) toxin
Descriptor: ACETATE ION, HEPN toxin
Authors:Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V.
Deposit date:2020-09-17
Release date:2020-12-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.
Mol.Cell, 80, 2020
7AE2
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BU of 7ae2 by Molmil
Crystal structure of HEPN(H107A-Y109F) toxin in complex with MNT antitoxin
Descriptor: HEPN toxin, MNT ANTITOXIN
Authors:Tamulaitiene, G, Sasnauskas, G, Songailiene, I, Juozapaitis, J, Siksnys, V.
Deposit date:2020-09-17
Release date:2020-12-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.
Mol.Cell, 80, 2020
4X2Q
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BU of 4x2q by Molmil
Crystal Structure of Human Aldehyde Dehydrogenase, ALDH1a2
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Retinal dehydrogenase 2
Authors:Stenkamp, R.E, Le Trong, I, Amory, J.K, Paik, J, Goldstein, A.S.
Deposit date:2014-11-26
Release date:2015-12-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Synthesis and In Vitro Testing of Bisdichloroacetyldiamine Analogs for Use as a Reversible Male Contraceptive
To Be Published
6UFV
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BU of 6ufv by Molmil
Crystal structure of the CBM3 from Bacillus subtilis at 1.06 angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, Endoglucanase
Authors:Morais, M.A.B, Paiva, J.H, Murakami, M.T.
Deposit date:2019-09-25
Release date:2020-09-30
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Crystal structure of the CBM3 from Bacillus subtilis at 1.06 angstrom resolution
To Be Published
6UFW
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BU of 6ufw by Molmil
Crystal structure of the CBM3 from Bacillus subtilis at 1.28 angstrom resolution
Descriptor: Endoglucanase
Authors:Morais, M.A.B, Paiva, J.H, Murakami, M.T.
Deposit date:2019-09-25
Release date:2020-09-30
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structure of the CBM3 from Bacillus subtilis at 1.28 angstrom resolution
To Be Published

 

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