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PDB: 314 results

1F1W
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SRC SH2 THREF1TRP MUTANT COMPLEXED WITH THE PHOSPHOPEPTIDE S(PTR)VNVQN
Descriptor: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC, S(PTR)VNVQN PHOSPHOPEPTIDE
Authors:Kimber, M.S, Nachman, J, Cunningham, A.M, Gish, G.D, Pawson, T, Pai, E.F.
Deposit date:2000-05-20
Release date:2000-07-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for specificity switching of the Src SH2 domain.
Mol.Cell, 5, 2000
1F2F
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SRC SH2 THREF1TRP MUTANT
Descriptor: PHOSPHATE ION, PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
Authors:Kimber, M.S, Nachman, J, Cunningham, A.M, Gish, G.D, Pawson, T, Pai, E.F.
Deposit date:2000-05-24
Release date:2000-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for specificity switching of the Src SH2 domain.
Mol.Cell, 5, 2000
2P8L
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Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELLELDKWASLWN
Descriptor: gp41 peptide, nmAb 2F5, heavy chain, ...
Authors:Julien, J.P, Bryson, S, Pai, E.F.
Deposit date:2007-03-22
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.
J.Mol.Biol., 384, 2008
2P1F
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BU of 2p1f by Molmil
Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)
Descriptor: GLYCEROL, SODIUM ION, SULFATE ION, ...
Authors:Liu, Y, Tang, H.L, Pai, E.F.
Deposit date:2007-03-05
Release date:2007-04-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)
TO BE PUBLISHED
2PW2
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BU of 2pw2 by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKWKSL
Descriptor: 2F5 Fab' heavy chain, 2F5 Fab' light chain, peptide epitope
Authors:Bryson, S, Julien, J.-P, Hynes, R.C, Pai, E.F.
Deposit date:2007-05-10
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
2PW1
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Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKWNSL
Descriptor: 2F5 Fab fragment heavy chain, 2F5 Fab fragment light chain, peptide epitope
Authors:Bryson, S, Julien, J.-P, Hynes, R.C, Pai, E.F.
Deposit date:2007-05-10
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
4PAU
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Hypothetical protein SA1058 from S. aureus.
Descriptor: CHLORIDE ION, Nitrogen regulatory protein A
Authors:Battaile, K.P, Wu-Brown, J, Romanov, V, Jones, K, Lam, R, Pai, E.F, Chirgadze, N.Y.
Deposit date:2014-04-10
Release date:2015-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hypothetical protein SA1058 from S. aureus.
To Be Published
1HYB
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BU of 1hyb by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE SITE MUTANT OF METHANOBACTERIUM THERMOAUTOTROPHICUM NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE, SULFATE ION
Authors:Saridakis, V, Christendat, D, Kimber, M.S, Edwards, A.M, Pai, E.F.
Deposit date:2001-01-18
Release date:2001-03-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into ligand binding and catalysis of a central step in NAD+ synthesis: structures of Methanobacterium thermoautotrophicum NMN adenylyltransferase complexes.
J.Biol.Chem., 276, 2001
3BAR
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BU of 3bar by Molmil
Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-azido-UMP
Descriptor: Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE
Authors:Liu, Y, Bello, A.M, Poduch, E, Lau, W, Kotra, L.P, Pai, E.F.
Deposit date:2007-11-08
Release date:2008-01-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Activity Relationships of C6-Uridine Derivatives Targeting Plasmodia Orotidine Monophosphate Decarboxylase.
J.Med.Chem., 51, 2008
1U8P
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BU of 1u8p by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ECDKWCS
Descriptor: ANTIBODY 2F5 (HEAVY CHAIN), ANTIBODY 2F5 (LIGHT CHAIN), GP41 PEPTIDE
Authors:Bryson, S, Julien, J.-P, Hynes, R.C, Pai, E.F.
Deposit date:2004-08-06
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications
J.Virol., 83, 2009
3BQU
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BU of 3bqu by Molmil
Crystal Structure of the 2F5 Fab'-3H6 Fab Complex
Descriptor: 2F5 Fab' heavy chain, 2F5 Fab' light chain, 3H6 Fab heavy chain, ...
Authors:Bryson, S, Julien, J.-P, Isenman, D.E, Kunert, R, Katinger, H, Pai, E.F.
Deposit date:2007-12-20
Release date:2008-10-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the complex between the F(ab)' fragment of the cross-neutralizing anti-HIV-1 antibody 2F5 and the F(ab) fragment of its anti-idiotypic antibody 3H6.
J.Mol.Biol., 382, 2008
3BK0
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BU of 3bk0 by Molmil
Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP
Descriptor: 5-CYANO-URIDINE-5'-MONOPHOSPHATE, GLYCEROL, SULFATE ION, ...
Authors:Liu, Y, Tang, H.L, Avina, M.E.M, Kotra, L.P, Pai, E.F.
Deposit date:2007-12-05
Release date:2008-11-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP
To be Published
1LOS
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BU of 1los by Molmil
crystal structure of orotidine monophosphate decarboxylase mutant deltaR203A complexed with 6-azaUMP
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, orotidine monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-06
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
1LP6
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BU of 1lp6 by Molmil
Crystal structure of orotidine monophosphate decarboxylase complexed with CMP
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, orotidine monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-07
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
1LOL
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Crystal structure of orotidine monophosphate decarboxylase complex with XMP
Descriptor: 1,3-BUTANEDIOL, XANTHOSINE-5'-MONOPHOSPHATE, orotidine 5'-monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-06
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
1M8K
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BU of 1m8k by Molmil
Crystal Structure Of Methanobacterium Thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase Mutant H19A complexed with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Nicotinamide-nucleotide Adenylyltransferase, SULFATE ION
Authors:Saridakis, V, Pai, E.F.
Deposit date:2002-07-25
Release date:2003-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mutational, Structural, and Kinetic Studies of the ATP-binding Site of Methanobacterium thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase
J.Biol.Chem., 278, 2003
1LVW
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Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Dong, A, Christendat, D, Pai, E.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-05-29
Release date:2003-07-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP
To be Published
3RI0
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BU of 3ri0 by Molmil
Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Descriptor: BB_2cx5_001, GLYCEROL, SULFATE ION
Authors:Azoitei, M.L, Ban, Y.A, Julien, J.P, Bryson, S, Schroeter, A, Kalyuzhniy, O, Porter, J.R, Adachi, Y, Baker, D, Szabo, E, Pai, E.F, Schief, W.R.
Deposit date:2011-04-12
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
J.Mol.Biol., 415, 2012
1N5X
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BU of 1n5x by Molmil
Xanthine Dehydrogenase from Bovine Milk with Inhibitor TEI-6720 Bound
Descriptor: 2-(3-CYANO-4-ISOBUTOXY-PHENYL)-4-METHYL-5-THIAZOLE-CARBOXYLIC ACID, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Eger, B.T, Nishino, T, Kondo, S, Pai, E.F, Nishino, T.
Deposit date:2002-11-07
Release date:2003-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An Extremely Potent Inhibitor of Xanthine Oxidoreductase: Crystal Structure of the Enzyme-Inhibitor Complex and Mechanism of Inhibition
J.BIOL.CHEM., 278, 2003
2F5A
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BU of 2f5a by Molmil
CRYSTAL STRUCTURE OF FAB' FROM THE HIV-1 NEUTRALIZING ANTIBODY 2F5
Descriptor: PROTEIN (ANTIBODY 2F5 (HEAVY CHAIN)), PROTEIN (ANTIBODY 2F5 (LIGHT CHAIN))
Authors:Bryson, S, Julien, J.P, Hynes, R.C, Pai, E.F.
Deposit date:1999-04-08
Release date:2003-07-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
3O79
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Crystal Structure of Wild-type Rabbit PrP 126-230
Descriptor: CHLORIDE ION, GLYCEROL, Rabbit PrP, ...
Authors:Sweeting, B, Chakrabartty, A, Pai, E.F.
Deposit date:2010-07-30
Release date:2010-11-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Prion disease susceptibility is affected by beta-structure folding propensity and local side-chain interactions in PrP.
Proc.Natl.Acad.Sci.USA, 107, 2010
3R3U
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BU of 3r3u by Molmil
Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/apo
Descriptor: CHLORIDE ION, Fluoroacetate dehalogenase, NICKEL (II) ION
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-16
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011
3R41
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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - His280Asn/apo
Descriptor: CALCIUM ION, CHLORIDE ION, Fluoroacetate dehalogenase
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-17
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011
3R3W
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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Chloroacetate
Descriptor: CALCIUM ION, CHLORIDE ION, Fluoroacetate dehalogenase, ...
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-16
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011
3R3V
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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Fluoroacetate
Descriptor: CALCIUM ION, CHLORIDE ION, Fluoroacetate dehalogenase, ...
Authors:Chan, P.W.Y, Yakunin, A.F, Edwards, E.A, Pai, E.F.
Deposit date:2011-03-16
Release date:2011-05-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping the reaction coordinates of enzymatic defluorination.
J.Am.Chem.Soc., 133, 2011

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