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PDB: 314 results

2P8M
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Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELLELDKWASLWN in new crystal form
Descriptor: gp41 peptide, nmAb 2F5, heavy chain, ...
Authors:Julien, J.P, Bryson, S, Pai, E.F.
Deposit date:2007-03-22
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.
J.Mol.Biol., 384, 2008
2PR4
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Crystal Structure of Fab' from the HIV-1 Neutralizing Antibody 2F5
Descriptor: nmAb 2F5 Fab' Heavy Chain, nmAb 2F5 Fab' light Chain
Authors:Bryson, S, Julien, J.-P, Pai, E.F.
Deposit date:2007-05-03
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.
J.Mol.Biol., 384, 2008
2Q8L
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Crystal structure of orotidine 5'-phosphate decarboxylase from Plasmodium falciparum
Descriptor: Orotidine-monophosphate-decarboxylase, PHOSPHATE ION
Authors:Liu, Y, Lau, W, Lew, J, Amani, M, Hui, R, Pai, E.F, Structural Genomics Consortium (SGC)
Deposit date:2007-06-11
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of orotidine 5'-phosphate decarboxylase from Plasmodium falciparum.
To be Published
1U8P
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Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ECDKWCS
Descriptor: ANTIBODY 2F5 (HEAVY CHAIN), ANTIBODY 2F5 (LIGHT CHAIN), GP41 PEPTIDE
Authors:Bryson, S, Julien, J.-P, Hynes, R.C, Pai, E.F.
Deposit date:2004-08-06
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications
J.Virol., 83, 2009
3W07
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Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP.
Descriptor: GLYCEROL, Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE
Authors:Fujihashi, M, Pai, E.F, Miki, K.
Deposit date:2012-10-22
Release date:2013-02-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism.
J.Biol.Chem., 288, 2013
3VSB
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SUBTILISIN CARLSBERG D-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
Descriptor: SODIUM ION, SUBTILISIN CARLSBERG, TYPE VIII
Authors:Stoll, V.S, Eger, B.T, Hynes, R.C, Martichonok, V, Jones, J.B, Pai, E.F.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Differences in binding modes of enantiomers of 1-acetamido boronic acid based protease inhibitors: crystal structures of gamma-chymotrypsin and subtilisin Carlsberg complexes.
Biochemistry, 37, 1998
3NTS
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BU of 3nts by Molmil
Catalytic domain of VsdC from Aeromonas hydrophila
Descriptor: SULFATE ION, VsdC
Authors:Pfoh, R, Shniffer, A, Merrill, A.R, Pai, E.F.
Deposit date:2010-07-05
Release date:2011-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Biochemical characterization of an actin-targeting ADP ribosyltransferase from aeromonas hydrophila and the identification of a novel inhibitor for this toxin family
To be Published
3NUR
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Crystal structure of a putative amidohydrolase from Staphylococcus aureus
Descriptor: Amidohydrolase, CALCIUM ION
Authors:Qiu, W, Lam, R, Romanov, V, Lam, K, Soloveychik, M, Pai, E.F, Chirgadze, N.Y.
Deposit date:2010-07-07
Release date:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a putative amidohydrolase from Staphylococcus aureus
To be Published
1LOS
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crystal structure of orotidine monophosphate decarboxylase mutant deltaR203A complexed with 6-azaUMP
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, orotidine monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-06
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
3WJW
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Wild-type orotidine 5'-monophosphate decarboxylase from M. thermoautotrophicus complexed with 6-methyl-UMP
Descriptor: 6-methyluridine 5'-(dihydrogen phosphate), Orotidine 5'-phosphate decarboxylase
Authors:Fujihashi, M, Kuroda, S, Pai, E.F, Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
1LP6
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Crystal structure of orotidine monophosphate decarboxylase complexed with CMP
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, orotidine monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-07
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
1DVJ
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CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
Authors:Wu, N, Mo, Y, Gao, J, Pai, E.F.
Deposit date:2000-03-30
Release date:2000-04-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Electrostatic stress in catalysis: structure and mechanism of the enzyme orotidine monophosphate decarboxylase.
Proc.Natl.Acad.Sci.USA, 97, 2000
1LOL
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Crystal structure of orotidine monophosphate decarboxylase complex with XMP
Descriptor: 1,3-BUTANEDIOL, XANTHOSINE-5'-MONOPHOSPHATE, orotidine 5'-monophosphate decarboxylase
Authors:Wu, N, Pai, E.F.
Deposit date:2002-05-06
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase.
J.Biol.Chem., 277, 2002
3G3M
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Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-iodo-UMP
Descriptor: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE, Uridine 5'-monophosphate synthase
Authors:Liu, Y, Tang, H.L, Bello, A.M, Poduch, E, Kotra, L.P, Pai, E.F.
Deposit date:2009-02-02
Release date:2009-03-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-activity relationships of orotidine-5'-monophosphate decarboxylase inhibitors as anticancer agents.
J.Med.Chem., 52, 2009
1U8O
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Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKHAS
Descriptor: ANTIBODY 2F5 (HEAVY CHAIN), ANTIBODY 2F5 (LIGHT CHAIN), GP41 PEPTIDE
Authors:Bryson, S, Julien, J.-P, Hynes, R.C, Pai, E.F.
Deposit date:2004-08-06
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications
J.Virol., 83, 2009
3WJY
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Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with 6-amino-UMP
Descriptor: 6-AMINOURIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-phosphate decarboxylase
Authors:Fujihashi, M, Pai, E.F, Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
1LVW
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Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Dong, A, Christendat, D, Pai, E.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-05-29
Release date:2003-07-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP
To be Published
1M8K
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Crystal Structure Of Methanobacterium Thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase Mutant H19A complexed with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Nicotinamide-nucleotide Adenylyltransferase, SULFATE ION
Authors:Saridakis, V, Pai, E.F.
Deposit date:2002-07-25
Release date:2003-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mutational, Structural, and Kinetic Studies of the ATP-binding Site of Methanobacterium thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase
J.Biol.Chem., 278, 2003
1EJ2
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Crystal structure of methanobacterium thermoautotrophicum nicotinamide mononucleotide adenylyltransferase with bound NAD+
Descriptor: NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Saridakis, V, Christendat, D, Kimber, M.S, Edwards, A.M, Pai, E.F, Midwest Center for Structural Genomics (MCSG), Northeast Structural Genomics Consortium (NESG)
Deposit date:2000-02-29
Release date:2001-03-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into ligand binding and catalysis of a central step in NAD+ synthesis: structures of Methanobacterium thermoautotrophicum NMN adenylyltransferase complexes.
J.Biol.Chem., 276, 2001
3PQR
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BU of 3pqr by Molmil
Crystal structure of Metarhodopsin II in complex with a C-terminal peptide derived from the Galpha subunit of transducin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Guanine nucleotide-binding protein G(t) subunit alpha-1, ...
Authors:Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
Deposit date:2010-11-26
Release date:2011-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of metarhodopsin II.
Nature, 471, 2011
3PXO
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Crystal structure of Metarhodopsin II
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, RETINAL, ...
Authors:Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
Deposit date:2010-12-10
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of metarhodopsin II.
Nature, 471, 2011
3EYF
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Crystal structure of anti-human cytomegalovirus antibody 8f9 plus gB peptide
Descriptor: 8f9 Fab, AD-2, GLYCEROL, ...
Authors:Thomson, C.A, Bryson, S, McLean, G.R, Creagh, A.L, Pai, E.F, Schrader, J.W.
Deposit date:2008-10-20
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Germline V-genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus.
Embo J., 27, 2008
3D7R
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Crystal structure of a putative esterase from Staphylococcus aureus
Descriptor: BROMIDE ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Lam, R, Battaile, K.P, Chan, T, Romanov, V, Lam, K, Soloveychik, M, Wu-Brown, J, Pai, E.F, Chirgadze, N.Y.
Deposit date:2008-05-21
Release date:2009-06-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of a putative esterase from Staphylococcus aureus
To be Published
3THQ
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Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase complexed with 6-amino-UMP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 6-AMINOURIDINE 5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
Authors:Liu, Y, Kotra, L.P, Pai, E.F.
Deposit date:2011-08-19
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase complexed with 6-amino-UMP
To be Published
1KM2
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crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
Authors:Wu, N, Gillon, W, Pai, E.F.
Deposit date:2001-12-13
Release date:2002-06-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography.
Biochemistry, 41, 2002

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数据于2024-06-12公开中

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