Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 results

8G55
DownloadVisualize
BU of 8g55 by Molmil
Temperature-dependent structures of tau aggregates
Descriptor: Microtubule-associated protein tau
Authors:El Mammeri, N, Duan, P, Dregni, A.J, Hong, M.
Deposit date:2023-02-11
Release date:2023-06-07
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Amyloid fibril structures of tau: Conformational plasticity of the second microtubule-binding repeat.
Sci Adv, 9, 2023
7FT5
DownloadVisualize
BU of 7ft5 by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with POB0093
Descriptor: 1,2-ETHANEDIOL, 4-(4-methoxyphenyl)oxane-4-carboxylic acid, ALANINE, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
7FSO
DownloadVisualize
BU of 7fso by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z198195770
Descriptor: 1,2-ETHANEDIOL, D-GLUTAMIC ACID, GLYCINE, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
7FSQ
DownloadVisualize
BU of 7fsq by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1429867185
Descriptor: 1,2-ETHANEDIOL, 4-methoxy-1H-indole, ALANINE, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
7FSS
DownloadVisualize
BU of 7fss by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z839706072
Descriptor: 1,2-ETHANEDIOL, 2-(4-bromanylpyrazol-1-yl)-~{N}-cyclopropyl-~{N}-methyl-ethanamide, ALANINE, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
5AZJ
DownloadVisualize
BU of 5azj by Molmil
Crystal structure of glycerol kinase from Trypanosoma brucei gambiense complexed with 4NP (with disulfide bridge)
Descriptor: 4-NITROPHENYL PHOSPHATE, GLYCEROL, Glycerol kinase
Authors:Balogun, E.O, Inaoka, D.K, Shiba, T, Tokuoka, S.M, Tokumasu, F, Sakamoto, K, Michels, P.A.M, Harada, S, Kita, K.
Deposit date:2015-10-08
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Glycerol kinase of African trypanosomes possesses an intrinsic phosphatase activity.
Biochim Biophys Acta Gen Subj, 1861, 2017
7FSZ
DownloadVisualize
BU of 7fsz by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z3006151474
Descriptor: (5S)-5-(difluoromethoxy)pyridin-2(5H)-one, 1,2-ETHANEDIOL, D-GLUTAMIC ACID, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
8G54
DownloadVisualize
BU of 8g54 by Molmil
Temperature-dependent structures of tau aggregates
Descriptor: Microtubule-associated protein tau
Authors:El Mammeri, N, Duan, P, Dregni, A.J, Hong, M.
Deposit date:2023-02-11
Release date:2023-06-07
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Amyloid fibril structures of tau: Conformational plasticity of the second microtubule-binding repeat.
Sci Adv, 9, 2023
7FT4
DownloadVisualize
BU of 7ft4 by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z48847594
Descriptor: 1,2-ETHANEDIOL, ALANINE, D-GLUTAMIC ACID, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
3ZLG
DownloadVisualize
BU of 3zlg by Molmil
Structure of group A Streptococcal enolase K362A mutant
Descriptor: ENOLASE, PHOSPHATE ION
Authors:Cork, A.J, Ericsson, D.J, Law, R.H.P, Casey, L.W, Valkov, E, Bertozzi, C, Stamp, A, Aquilina, J.A, Whisstock, J.C, Walker, M.J, Kobe, B.
Deposit date:2013-01-31
Release date:2014-02-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase.
Plos One, 10, 2015
7FT3
DownloadVisualize
BU of 7ft3 by Molmil
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z291279160
Descriptor: 1,2-ETHANEDIOL, 1-[2-(trifluoromethyloxy)phenyl]thiourea, ALANINE, ...
Authors:Bradshaw, W.J, Katis, V.L, Bountra, C, von Delft, F, Brennan, P.E.
Deposit date:2023-01-24
Release date:2023-02-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:SDCBP PanDDA analysis group deposition
To Be Published
1TLB
DownloadVisualize
BU of 1tlb by Molmil
Yeast coproporphyrinogen oxidase
Descriptor: Coproporphyrinogen III oxidase, SULFATE ION
Authors:Phillip, J.D, Whitby, F.G, Warby, C.A, Labbe, P, Yang, C, Pflugrath, J.W, Ferrara, J.D, Robinson, H, Kushner, J.P, Hill, C.P.
Deposit date:2004-06-09
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the oxygen-dependent coproporphyrinogen oxidase (Hem13p) of Saccharomyces cerevisiae
J.Biol.Chem., 279, 2004
1XF2
DownloadVisualize
BU of 1xf2 by Molmil
Structure of Fab DNA-1 complexed with dT3
Descriptor: 5'-D(*TP*TP*T)-3', SULFATE ION, antibody heavy chain Fab, ...
Authors:Schuermann, J.P, Prewitt, S.P, Deutscher, S.L, Tanner, J.J.
Deposit date:2004-09-13
Release date:2005-04-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evidence for Structural Plasticity of Heavy Chain Complementarity-determining Region 3 in Antibody-ssDNA Recognition
J.Mol.Biol., 347, 2005
1JB7
DownloadVisualize
BU of 1jb7 by Molmil
DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, SODIUM ION, ...
Authors:Horvath, M.P, Schultz, S.C.
Deposit date:2001-06-02
Release date:2001-06-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:DNA G-quartets in a 1.86 A resolution structure of an Oxytricha nova telomeric protein-DNA complex.
J.Mol.Biol., 310, 2001
4IRI
DownloadVisualize
BU of 4iri by Molmil
Auto-inhibited ERG Ets Domain-DNA Complex
Descriptor: DNA (5'-D(*CP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*G)-3'), Transcriptional regulator ERG
Authors:Regan, M.C, Horanyi, P.S, Pryor, E.E, Sarver, J.L, Cafiso, D.S, Bushweller, J.H.
Deposit date:2013-01-14
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural and dynamic studies of the transcription factor ERG reveal DNA binding is allosterically autoinhibited.
Proc.Natl.Acad.Sci.USA, 110, 2013
3ZSZ
DownloadVisualize
BU of 3zsz by Molmil
Small molecule inhibitors of the LEDGF site of HIV type 1 integrase identified by fragment screening and structure based drug design
Descriptor: (R)-[2-[[(2S)-BUTAN-2-YL]CARBAMOYL]PHENYL]METHYL-[(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL]-METHYL-AZANIUM, ACETATE ION, CHLORIDE ION, ...
Authors:Peat, T.S, Newman, J, Rhodes, D.I, Vandergraaff, N, Le, G, Jones, E.D, Smith, J.A, Coates, J.A.V, Thienthong, N, Dolezal, O, Ryan, J.H, Savage, G.P, Francis, C.L, Deadman, J.J.
Deposit date:2011-07-01
Release date:2012-07-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Small Molecule Inhibitors of the Ledgf Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based Design.
Plos One, 7, 2012
4L0U
DownloadVisualize
BU of 4l0u by Molmil
Crystal structure of Plasmodium vivax Prx1a
Descriptor: 2-Cys peroxiredoxin, putative, ACETATE ION
Authors:Gretes, M.C, Karplus, P.A.
Deposit date:2013-06-01
Release date:2016-11-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Observed octameric assembly of a Plasmodium yoelii peroxiredoxin can be explained by the replacement of native "ball-and-socket" interacting residues by an affinity tag.
Protein Sci., 22, 2013
6R3A
DownloadVisualize
BU of 6r3a by Molmil
BACTERIOPHAGE SPP1 MATURE CAPSID PROTEIN
Descriptor: Major capsid protein
Authors:Ignatiou, A, El Sadek Fadel, M, Buerger, J, Mielke, T, Topf, M, Tavares, P.
Deposit date:2019-03-19
Release date:2019-10-23
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural transitions during the scaffolding-driven assembly of a viral capsid.
Nat Commun, 10, 2019
1MRR
DownloadVisualize
BU of 1mrr by Molmil
SUBSTITUTION OF MANGANESE FOR IRON IN RIBONUCLEOTIDE REDUCTASE FROM ESCHERICHIA COLI. SPECTROSCOPIC AND CRYSTALLOGRAPHIC CHARACTERIZATION
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, RIBONUCLEOTIDE REDUCTASE R1 PROTEIN
Authors:Eklund, H, Nordlund, P.
Deposit date:1992-07-28
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization.
J.Biol.Chem., 267, 1992
7OA6
DownloadVisualize
BU of 7oa6 by Molmil
Pseudo-atomic model for Hsp26 residues 63 to 214. Please be advised that the target map is not of sufficient resolution to unambiguously position backbone or side chain atoms. This model represents a likely fit.
Descriptor: Heat shock protein 26
Authors:Muehlhofer, M, Peters, C, Kriehuber, T, Kreuzeder, M, Kazman, P, Rodina, N, Reif, B, Haslbeck, M, Weinkauf, S, Buchner, J.
Deposit date:2021-04-19
Release date:2021-11-24
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble.
Nat Commun, 12, 2021
8GJY
DownloadVisualize
BU of 8gjy by Molmil
Structure of a cGAS-like receptor Sp-cGLR1 from S. pistillata
Descriptor: cGAS-like receptor 1
Authors:Li, Y, Toyoda, H, Slavik, K.M, Morehouse, B.R, Kranzusch, P.J.
Deposit date:2023-03-16
Release date:2023-07-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:cGLRs are a diverse family of pattern recognition receptors in innate immunity.
Cell, 186, 2023
4L53
DownloadVisualize
BU of 4l53 by Molmil
Crystal Structure of (1R,4R)-4-{4-[7-amino-2-(1,2,3-benzothiadiazol-7-yl)-3-chlorofuro[2,3-c]pyridin-4-yl]-1H-pyrazol-1-yl}cyclohexan-1-ol bound to TAK1-TAB1
Descriptor: 1,2-ETHANEDIOL, Mitogen-activated protein kinase kinase kinase 7, TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 chimera, ...
Authors:Wang, J, Hornberger, K.R, Crew, A.P, Jestel, A, Maskos, K, Moertl, M.
Deposit date:2013-06-10
Release date:2013-07-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Discovery of 7-aminofuro[2,3-c]pyridine inhibitors of TAK1: Optimization of kinase selectivity and pharmacokinetics.
Bioorg.Med.Chem.Lett., 23, 2013
7O6P
DownloadVisualize
BU of 7o6p by Molmil
Structure of the borneol dehydrogenase 2 of Salvia officinalis
Descriptor: borneol dehydrogenase
Authors:Dimos, N, Helmer, C.P.O, Hilal, T, Loll, B.
Deposit date:2021-04-12
Release date:2021-12-01
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.04 Å)
Cite:CryoEM analysis of small plant biocatalysts at sub-2 angstrom resolution.
Acta Crystallogr D Struct Biol, 78, 2022
3ZSN
DownloadVisualize
BU of 3zsn by Molmil
Structure of the mixed-function P450 MycG F286A mutant in complex with mycinamicin IV
Descriptor: BENZAMIDINE, GLYCEROL, MYCINAMICIN IV, ...
Authors:Li, S, Kells, P.M, Rutaganira, F.U, Anzai, Y, Kato, F, Sherman, D.H, Podust, L.M.
Deposit date:2011-06-29
Release date:2012-05-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate Recognition by the Multifunctional Cytochrome P450 Mycg in Mycinamicin Hydroxylation and Epoxidation Reactions.
J.Biol.Chem., 287, 2012
1XL0
DownloadVisualize
BU of 1xl0 by Molmil
Kinetic and crystallographic studies on 2-(beta-D-glucopyranosyl)-5-methyl-1,3,4-oxadiazole,-benzothiazole, and-benzimidazole, inhibitors of muscle glycogen phosphorylase b. Evidence for a new binding site.
Descriptor: (1R)-1,5-anhydro-1-(5-methyl-1,3,4-oxadiazol-2-yl)-D-glucitol, Glycogen phosphorylase, muscle form, ...
Authors:Chrysina, E.D, Kosmopoulou, M.N, Tiraidis, C, Kardakaris, R, Bischler, N, Leonidas, D.D, Hadady, Z, Somsak, L, Docsa, T, Gergely, P, Oikonomakos, N.G.
Deposit date:2004-09-30
Release date:2005-03-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Kinetic and crystallographic studies on 2-(beta-D-glucopyranosyl)-5-methyl-1, 3, 4-oxadiazole, -benzothiazole, and -benzimidazole, inhibitors of muscle glycogen phosphorylase b. Evidence for a new binding site
Protein Sci., 14, 2005

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon