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PDB: 46476 results

4KCU
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Pyruvate kinase (PYK) from Trypanosoma brucei soaked with D-Malate
Descriptor: 2,6-di-O-phosphono-beta-D-fructofuranose, D-MALATE, MAGNESIUM ION, ...
Authors:Zhong, W, Morgan, H.P, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
Deposit date:2013-04-24
Release date:2014-01-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Pyruvate kinases have an intrinsic and conserved decarboxylase activity.
Biochem.J., 458, 2014
1BV9
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BU of 1bv9 by Molmil
HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS
Descriptor: PROTEIN (HIV-1 PROTEASE), [4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE]
Authors:Ala, P, Chang, C.H.
Deposit date:1998-09-22
Release date:1998-09-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Counteracting HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with XV638 and SD146, cyclic urea amides with broad specificities.
Biochemistry, 37, 1998
4O6S
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BU of 4o6s by Molmil
1.32A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (H83A mutant, Zinc Bound)
Descriptor: 1,2-ETHANEDIOL, HasAp, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Lovell, S, Kumar, R, Battaile, K.P, Matsumura, H, Yao, H, Rodriguez, J.C, Moenne-Loccoz, P, Rivera, M.
Deposit date:2013-12-23
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Replacing the Axial Ligand Tyrosine 75 or Its Hydrogen Bond Partner Histidine 83 Minimally Affects Hemin Acquisition by the Hemophore HasAp from Pseudomonas aeruginosa.
Biochemistry, 53, 2014
3K1Q
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BU of 3k1q by Molmil
Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics
Descriptor: Core protein VP6, Outer capsid VP5, Outer capsid VP7, ...
Authors:Cheng, L.P, Zhu, J, Hiu, W.H, Zhang, X.K, Honig, B, Fang, Q, Zhou, Z.H.
Deposit date:2009-09-28
Release date:2010-03-23
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Backbone Model of an Aquareovirus Virion by Cryo-Electron Microscopy and Bioinformatics
J.Mol.Biol., 397, 2010
6AT8
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BU of 6at8 by Molmil
1.1 Angstrom Resolution Structure of Human Cellular Retinol-Binding Protein IV
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Retinoid-binding protein 7
Authors:Silvaroli, J.A, Pleshinger, M.J, Kiser, P.D, Golczak, M.
Deposit date:2017-08-28
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.105 Å)
Cite:1.1 Angstrom Resolution Structure of Human Cellular Retinol-Binding Protein IV
To Be Published
2R03
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BU of 2r03 by Molmil
Crystal Structure of ALIX/AIP1 in complex with the YPDL Late Domain
Descriptor: Programmed cell death 6-interacting protein, p6-Gag
Authors:Hill, C.P, Zhai, Q, Fisher, R.D.
Deposit date:2007-08-17
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structural and functional studies of ALIX interactions with YPX(n)L late domains of HIV-1 and EIAV.
Nat.Struct.Mol.Biol., 15, 2008
1K72
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BU of 1k72 by Molmil
The X-ray Crystal Structure Of Cel9G Complexed With cellotriose
Descriptor: CALCIUM ION, Endoglucanase 9G, GLYCEROL, ...
Authors:Mandelman, D, Belaich, A, Belaich, J.P, Aghajari, N, Driguez, H, Haser, R.
Deposit date:2001-10-18
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-Ray Crystal Structure of the Multidomain Endoglucanase Cel9G from Clostridium cellulolyticum Complexed with Natural and Synthetic Cello-Oligosaccharides
J.BACTERIOL., 185, 2003
3KAD
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BU of 3kad by Molmil
Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Descriptor: 3-(1H-benzimidazol-2-yl)-N-(3-phenylpropanoyl)-D-alanine, DODECAETHYLENE GLYCOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Baker, L.M, Dokurno, P, Robinson, D.A, Surgenor, A.E, Murray, J.B, Potter, A.J, Moore, J.D.
Deposit date:2009-10-19
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-guided design of alpha-amino acid-derived Pin1 inhibitors
Bioorg.Med.Chem.Lett., 20, 2010
4DB6
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BU of 4db6 by Molmil
Designed Armadillo repeat protein (YIIIM3AII)
Descriptor: Armadillo repeat protein
Authors:Madhurantakam, C, Varadamsetty, G, Grutter, M.G, Pluckthun, A, Mittl, P.R.E.
Deposit date:2012-01-13
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based optimization of designed Armadillo-repeat proteins.
Protein Sci., 21, 2012
4KB6
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BU of 4kb6 by Molmil
Structure of porcine cyclic GMP AMP synthase (CGAS) in complex with DNA, ATP and GTP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)-3'), GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Deimling, T, Hopfner, K.-P.
Deposit date:2013-04-23
Release date:2013-06-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.0754 Å)
Cite:Structural mechanism of cytosolic DNA sensing by cGAS.
Nature, 498, 2013
1C38
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BU of 1c38 by Molmil
SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMEDIATE
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), POTASSIUM ION
Authors:Bolton, P.H, Marathias, V.M, Wang, K.
Deposit date:1999-07-25
Release date:1999-08-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA.
Nucleic Acids Res., 28, 2000
1K98
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BU of 1k98 by Molmil
AdoMet complex of MetH C-terminal fragment
Descriptor: COBALAMIN, Methionine synthase, SULFATE ION
Authors:Bandarian, V, Pattridge, K.A, Lennon, B.W, Huddler, D.P, Matthews, R.G, Ludwig, M.L.
Deposit date:2001-10-27
Release date:2001-12-21
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:Domain alternation switches B(12)-dependent methionine synthase to the activation conformation.
Nat.Struct.Biol., 9, 2002
4DD1
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BU of 4dd1 by Molmil
EVAL processed HEWL, cisplatin aqueous paratone
Descriptor: 2-methylprop-1-ene, Lysozyme C
Authors:Tanley, S.W, Schreurs, A.M, Kroon-Batenburg, L.M, Meredith, J, Prendergast, R, Walsh, D, Bryant, P, Levy, C, Helliwell, J.R.
Deposit date:2012-01-18
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural studies of the effect that dimethyl sulfoxide (DMSO) has on cisplatin and carboplatin binding to histidine in a protein.
Acta Crystallogr.,Sect.D, 68, 2012
2MN8
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BU of 2mn8 by Molmil
NMR structure of a peptoid analogue of maculatin G15 containing cis-Nleu at position 13
Descriptor: maculatin G15
Authors:Uggerhoej, L.E, Guentert, P, Wimmer, R.
Deposit date:2014-03-29
Release date:2014-07-23
Last modified:2014-12-03
Method:SOLUTION NMR
Cite:Structural features of peptoid-peptide hybrids in lipid-water interfaces.
Febs Lett., 588, 2014
1KBY
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BU of 1kby by Molmil
Structure of Photosynthetic Reaction Center with bacteriochlorophyll-bacteriopheophytin heterodimer
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Camara-Artigas, A, Magee, C, Goetsch, A, Allen, J.P.
Deposit date:2001-11-07
Release date:2002-11-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of the heterodimer reaction center from Rhodobacter sphaeroides at 2.55 a resolution.
Photosynth.Res., 74, 2002
2MND
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BU of 2mnd by Molmil
Recognition complex of DNA d(CGACGCGTCG)2 with thiazotropsin B
Descriptor: 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3', thiazotropsin B
Authors:Alniss, H.Y, Salvia, M.-V, Sadikov, M, Golovchenko, I, Anthony, N.G, Khalaf, A.I, Mackay, S.P, Suckling, C.J, Parkinson, J.A.
Deposit date:2014-04-03
Release date:2014-07-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition of the DNA minor groove by thiazotropsin analogues.
Chembiochem, 15, 2014
3EMQ
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BU of 3emq by Molmil
Crystal structure of xilanase XynB from Paenibacillus barcelonensis complexed with an inhibitor
Descriptor: (1S,2S,3R,6R)-6-[(2-hydroxybenzyl)amino]cyclohex-4-ene-1,2,3-triol, Endo-1,4-beta-xylanase
Authors:Sanz-Aparicio, J, Isorna, P.
Deposit date:2008-09-25
Release date:2009-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Structural insights into the specificity of Xyn10B from Paenibacillus barcinonensis and its improved stability by forced protein evolution.
J.Biol.Chem., 285, 2010
1Y4V
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BU of 1y4v by Molmil
T-To-T(High) quaternary transitions in human hemoglobin: betaC93A deoxy low-salt (1 test set)
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kavanaugh, J.S, Rogers, P.H, Arnone, A.
Deposit date:2004-12-01
Release date:2004-12-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions.
Biochemistry, 44, 2005
4DHS
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BU of 4dhs by Molmil
Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening
Descriptor: (2-{2-[(3,5-dichlorophenyl)amino]-2-oxoethoxy}phenyl)phosphonic acid, 14-3-3 PROTEIN SIGMA, CHLORIDE ION, ...
Authors:Thiel, P, Roeglin, L, Kohlbacher, O, Ottmann, C.
Deposit date:2012-01-30
Release date:2013-07-31
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Virtual screening and experimental validation reveal novel small-molecule inhibitors of 14-3-3 protein-protein interactions.
Chem.Commun.(Camb.), 49, 2013
1BNZ
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BU of 1bnz by Molmil
SSO7D HYPERTHERMOPHILE PROTEIN/DNA COMPLEX
Descriptor: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3', DNA-BINDING PROTEIN 7A
Authors:Gao, Y.-G, Su, S.-Y, Robinson, H, Padmanabhan, S, Lim, L, Mccrary, B.S, Edmondos, S.P, Shrive, J.W, Wang, A.H.-J.
Deposit date:1998-07-31
Release date:1998-11-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.
Nat.Struct.Biol., 5, 1998
1KBV
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BU of 1kbv by Molmil
NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE
Descriptor: COPPER (II) ION, Major outer membrane protein PAN 1, NITRITE ION
Authors:Boulanger, M.J, Murphy, M.E.P.
Deposit date:2001-11-06
Release date:2001-12-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the soluble domain of the major anaerobically induced outer membrane protein (AniA) from pathogenic Neisseria: a new class of copper-containing nitrite reductases.
J.Mol.Biol., 315, 2002
3J35
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BU of 3j35 by Molmil
Cryo-EM reconstruction of Dengue virus at 37 C
Descriptor: envelope protein
Authors:Zhang, X.Z, Sheng, J, Plevka, P, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
Deposit date:2013-02-24
Release date:2013-04-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Dengue structure differs at the temperatures of its human and mosquito hosts.
Proc.Natl.Acad.Sci.USA, 110, 2013
1Y0A
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BU of 1y0a by Molmil
T-to-THigh Quaternary Transitions in Human Hemoglobin: alphaY140A deoxy low-salt
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kavanaugh, J.S, Rogers, P.H, Arnone, A.
Deposit date:2004-11-15
Release date:2004-12-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions.
Biochemistry, 44, 2005
4O5Y
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BU of 4o5y by Molmil
O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION
Authors:Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
Deposit date:2013-12-20
Release date:2014-07-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
2R4S
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BU of 2r4s by Molmil
Crystal structure of the human beta2 adrenoceptor
Descriptor: Beta-2 adrenergic receptor, antibody for beta2 adrenoceptor, heavy chain, ...
Authors:Rasmussen, S.G.F, Choi, H.J, Rosenbaum, D.M, Kobilka, T.S, Thian, F.S, Edwards, P.C, Burghammer, M, Ratnala, V.R, Sanishvili, R, Fischetti, R.F, Schertler, G.F, Weis, W.I, Kobilka, B.K.
Deposit date:2007-08-31
Release date:2007-11-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structure of the human beta2 adrenergic G-protein-coupled receptor.
Nature, 450, 2007

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