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PDB: 469 results

6ORH
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BU of 6orh by Molmil
Crystal structure of SpGH29
Descriptor: 1,2-ETHANEDIOL, Glycoside hydrolase, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-04-30
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens.
J.Biol.Chem., 294, 2019
6ORF
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BU of 6orf by Molmil
Crystal structure of SpGH29
Descriptor: 1,2-ETHANEDIOL, SpGH29, alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-04-30
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens.
J.Biol.Chem., 294, 2019
6ORG
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BU of 6org by Molmil
Crystal structure of SpGH29
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-04-30
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens.
J.Biol.Chem., 294, 2019
6POP
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BU of 6pop by Molmil
Crystal structure of DauA in complex with NADP+
Descriptor: 1,2-ETHANEDIOL, Aldehyde dehydrogenase, MAGNESIUM ION, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.147 Å)
Cite:Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies.
Commun Biol, 2, 2019
6PQL
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BU of 6pql by Molmil
SBP RafE in complex with raffinose
Descriptor: ABC transporter sugar-binding protein, beta-D-fructofuranose-(2-1)-[alpha-D-galactopyranose-(1-6)]alpha-D-glucopyranose
Authors:Meier, E.P.W, Boraston, A.B.
Deposit date:2019-07-09
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system.
J.Biol.Chem., 294, 2019
4IYD
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BU of 4iyd by Molmil
Insulin glargine crystal structure 1
Descriptor: Insulin A chain, Insulin B chain
Authors:Barba de la Rosa, A.P, Lara-Gonzalez, S, Montero-Moran, G.M, Escobedo-Moratilla, A.
Deposit date:2013-01-28
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Physicochemical and structural analysis of a biosimilar insulin glargine formulation and its reference
to be published
4IYF
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BU of 4iyf by Molmil
Insulin glargine crystal structure 2
Descriptor: Insulin A chain, Insulin B chain
Authors:Barba de la Rosa, A.P, Lara-Gonzalez, S, Montero-Moran, G.M, Escobedo-Moratilla, A.
Deposit date:2013-01-28
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Physicochemical and structural analysis of a biosimilar insulin glargine formulation and its reference
to be published
6XT1
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BU of 6xt1 by Molmil
The structure of the M60 catalytic domain from Clostridium perfringens ZmpC in complex the sialyl T antigen
Descriptor: 1,2-ETHANEDIOL, SERINE, ZINC ION, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2020-07-16
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Molecular insights into architecturally complex glycopeptidases
Proc.Natl.Acad.Sci.USA, 2021
6HHU
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BU of 6hhu by Molmil
Structure of the Bacillus anthracis Sap S-layer assembly domain
Descriptor: Nanobody AF694, S-layer protein sap, nanobody AF684
Authors:Remaut, H, Fioravanti, A.
Deposit date:2018-08-29
Release date:2019-07-24
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of S-layer protein Sap reveals a mechanism for therapeutic intervention in anthrax.
Nat Microbiol, 4, 2019
6XSX
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BU of 6xsx by Molmil
The structure of the catalytic module of the metalloprotease ZmpA from Clostridium perfringens
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ZmpA Glycopeptidase
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2020-07-16
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular insights into architecturally complex glycopeptidases
Proc.Natl.Acad.Sci.USA, 2021
6OR4
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BU of 6or4 by Molmil
Crystal structure of SpGH29
Descriptor: Glycoside hydrolase, beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-04-29
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two complementary alpha-fucosidases fromStreptococcus pneumoniaepromote complete degradation of host-derived carbohydrate antigens.
J.Biol.Chem., 294, 2019
4UU4
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BU of 4uu4 by Molmil
Crystal structure of LptH, the LptA homologous periplasmic component of the conserved lipopolysaccharide transport device from Pseudomonas aeruginosa
Descriptor: PERIPLASMIC LIPOPOLYSACCHARIDE TRANSPORT PROTEIN LPTH
Authors:Bollati, M, Villa, R, Gourlay, L.J, Barbiroli, A, Deho, G, Benedet, M, Polissi, A, Martorana, A, Sperandeo, P, Bolognesi, M, Nardini, M.
Deposit date:2014-07-24
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Crystal Structure of Lpth, the Periplasmic Component of the Lipopolysaccharide Transport Machinery from Pseudomonas Aeruginosa.
FEBS J., 282, 2015
5IMB
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BU of 5imb by Molmil
Crystal structure of peptidyl-tRNA hydrolase mutant-N14D from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-03-06
Release date:2017-03-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
4B8R
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BU of 4b8r by Molmil
Crystal Structure of Thermococcus litoralis ADP-dependent Glucokinase (GK)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADP-DEPENDENT GLUCOKINASE, ...
Authors:Herrera-Morande, A, Rivas-Pardo, J.A, Fernandez, F.J, Guixe, V, Vega, M.C.
Deposit date:2012-08-30
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure, Saxs and Kinetic Mechanism of Hyperthermophilic Adp-Dependent Glucokinase from Thermococcus Litoralis Reveal a Conserved Mechanism for Catalysis.
Plos One, 8, 2013
5FQE
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BU of 5fqe by Molmil
The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BETA-N-ACETYLGALACTOSAMINIDASE, BROMIDE ION, ...
Authors:Noach, I, Pluvinage, B, Laurie, C, Abe, K.T, Alteen, M, Vocadlo, D.J, Boraston, A.B.
Deposit date:2015-12-10
Release date:2016-03-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium Perfringens
J.Mol.Biol., 428, 2016
6PHV
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BU of 6phv by Molmil
SpAga galactose product complex structure
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-galactosidase, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-06-25
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system.
J.Biol.Chem., 294, 2019
5IKE
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BU of 5ike by Molmil
Crystal structure of mutant-D97N of peptidyl-tRNA hydrolase from Vibrio cholerae
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shahid, S, Kabra, A, Pal, R.K, Arora, A.
Deposit date:2016-03-03
Release date:2017-03-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Unraveling the stereochemical and dynamic aspects of the catalytic site of bacterial peptidyl-tRNA hydrolase.
RNA, 23, 2017
5KD2
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BU of 5kd2 by Molmil
BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, ZINC ION, metallopeptidase
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-07
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KDJ
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BU of 5kdj by Molmil
ZmpB metallopeptidase from Clostridium perfringens
Descriptor: F5/8 type C domain protein, GLYCEROL, SODIUM ION, ...
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7BRD
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BU of 7brd by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Klebsiella pneumoniae
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, BETA-MERCAPTOETHANOL, ...
Authors:Mundra, S, Zohib, M, Pal, R.K, Biswal, B.K, Arora, A.
Deposit date:2020-03-27
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Structural and functional characterization of peptidyl-tRNA hydrolase from Klebsiella pneumoniae.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
6PT4
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BU of 6pt4 by Molmil
Crystal structure of apo PsS1_NC
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Hettle, A.G, Boraston, A.B.
Deposit date:2019-07-14
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies.
Commun Biol, 2, 2019
8DF2
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BU of 8df2 by Molmil
The structure of the 'ALT' construct of the Amuc_1438 glycopeptidase
Descriptor: CALCIUM ION, NPCBM/NEW2 domain-containing protein, SODIUM ION, ...
Authors:Medley, B.J, Boraston, A.B.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A previously uncharacterized O-glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond.
J.Biol.Chem., 298, 2022
8DEK
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BU of 8dek by Molmil
The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438
Descriptor: 1,2-ETHANEDIOL, NPCBM/NEW2 domain-containing protein, SODIUM ION, ...
Authors:Medley, B.J, Boraston, A.B.
Deposit date:2022-06-20
Release date:2022-08-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A previously uncharacterized O-glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond.
J.Biol.Chem., 298, 2022
5I01
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BU of 5i01 by Molmil
Structure of phosphoheptose isomerase GmhA from Neisseria gonorrhoeae
Descriptor: Phosphoheptose isomerase, ZINC ION
Authors:Wierzbicki, I.H, Sikora, A.E, Korotkov, K.V.
Deposit date:2016-02-03
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Functional and structural studies on the Neisseria gonorrhoeae GmhA, the first enzyme in the glycero-manno-heptose biosynthesis pathways, demonstrate a critical role in lipooligosaccharide synthesis and gonococcal viability.
Microbiologyopen, 6, 2017
6XJ9
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BU of 6xj9 by Molmil
Structure of PfGH50B
Descriptor: 1,2-ETHANEDIOL, Agarase
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2020-06-23
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47
Acta Crystallogr.,Sect.F, 76, 2020

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