Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 311 results
1UHM
DownloadVisualize
BU of 1uhm by Molmil
Solution structure of the globular domain of linker histone homolog Hho1p from S. cerevisiae
Descriptor: Histone H1
Authors:Ono, K, Kusano, O, Shimotakahara, S, Shimizu, M, Yamazaki, T, Shindo, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-05
Release date:2003-12-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy.
Nucleic Acids Res., 31, 2003
5XOC
DownloadVisualize
BU of 5xoc by Molmil
Crystal structure of human Smad3-FoxH1 complex
Descriptor: Mothers against decapentaplegic homolog 3, Thioredoxin 1,Forkhead box protein H1
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2017-05-27
Release date:2018-03-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
4YOW
DownloadVisualize
BU of 4yow by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dC
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*CP*CP*CP*CP*CP*CP*C)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOX
DownloadVisualize
BU of 4yox by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOU
DownloadVisualize
BU of 4you by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.20A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOR
DownloadVisualize
BU of 4yor by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 1.52A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOY
DownloadVisualize
BU of 4yoy by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT and Mg2+ ion
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3', MAGNESIUM ION
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOV
DownloadVisualize
BU of 4yov by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*AP*AP*AP*AP*AP*AP*A)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
6M64
DownloadVisualize
BU of 6m64 by Molmil
Crystal structure of SMAD2 in complex with CBP
Descriptor: CBP, Mothers against decapentaplegic homolog 2
Authors:Miyazono, K, Ito, T, Wada, H, Tanokura, M.
Deposit date:2020-03-13
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling.
Sci.Signal., 13, 2020
7CFA
DownloadVisualize
BU of 7cfa by Molmil
Crystal structure of the restriction DNA glycosylase R.CcoLI
Descriptor: R.Pab1 family restriction endonuclease
Authors:Miyazono, K, Wang, D, Ito, T, Tanokura, M.
Deposit date:2020-06-25
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.355 Å)
Cite:Crystal structure and DNA cleavage mechanism of the restriction DNA glycosylase R.CcoLI from Campylobacter coli.
Sci Rep, 11, 2021
7CO1
DownloadVisualize
BU of 7co1 by Molmil
Crystal structure of SMAD2 in complex with wild-type CBP
Descriptor: CREB-binding protein, Mothers against decapentaplegic homolog 2
Authors:Miyazono, K, Wada, H, Ito, T, Tanokura, M.
Deposit date:2020-08-03
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling.
Sci.Signal., 13, 2020
8EQ1
DownloadVisualize
BU of 8eq1 by Molmil
Escherichia coli pyruvate kinase D127N
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-07
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EU4
DownloadVisualize
BU of 8eu4 by Molmil
Escherichia coli pyruvate kinase A301S
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-18
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EDQ
DownloadVisualize
BU of 8edq by Molmil
E. coli pyruvate kinase (PykF) I264F
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-09-05
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EDT
DownloadVisualize
BU of 8edt by Molmil
E. coli Pyruvate kinase (PykF) T462I
Descriptor: Pyruvate kinase
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-09-05
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EDR
DownloadVisualize
BU of 8edr by Molmil
E. coli pyruvate kinase (PykF) P70Q
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-09-05
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EDS
DownloadVisualize
BU of 8eds by Molmil
Escherichia coli pyruvate kinase (PykF) P70Q
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-09-05
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EQ0
DownloadVisualize
BU of 8eq0 by Molmil
Escherichia coli pyruvate kinase G381A
Descriptor: GLYCINE, Pyruvate kinase
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-07
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
8EQ3
DownloadVisualize
BU of 8eq3 by Molmil
Escherichia coli pyruvate kinase A301T
Descriptor: IMIDAZOLE, MALONATE ION, Pyruvate kinase, ...
Authors:Donovan, K.A, Coombes, D, Dobson, R.C.J, Cooper, T.F.
Deposit date:2022-10-07
Release date:2023-01-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Beneficial mutations occurring in E. coli pyruvate kinase afford new allosteric mechanisms leading to faster resumption of growth
To Be Published
3JRS
DownloadVisualize
BU of 3jrs by Molmil
Crystal structure of (+)-ABA-bound PYL1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRQ
DownloadVisualize
BU of 3jrq by Molmil
Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
5XOD
DownloadVisualize
BU of 5xod by Molmil
Crystal structure of human Smad2-Ski complex
Descriptor: Mothers against decapentaplegic homolog 2, Ski oncogene
Authors:Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M.
Deposit date:2017-05-27
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
4YOT
DownloadVisualize
BU of 4yot by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.15A resolution
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
1V3Z
DownloadVisualize
BU of 1v3z by Molmil
Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Descriptor: Acylphosphatase, CHLORIDE ION, POTASSIUM ION
Authors:Miyazono, K, Tanokura, M.
Deposit date:2003-11-07
Release date:2004-11-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 80, 2004
4YNG
DownloadVisualize
BU of 4yng by Molmil
Twinned pyruvate kinase from E. coli in the T-state
Descriptor: Pyruvate kinase I, SULFATE ION
Authors:Donovan, K.A, Dobson, R.C.J.
Deposit date:2015-03-10
Release date:2015-03-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Grappling with anisotropic data, pseudo-merohedral twinning and pseudo-translational noncrystallographic symmetry: a case study involving pyruvate kinase.
Acta Crystallogr D Struct Biol, 72, 2016

236060

PDB entries from 2025-05-14

PDB statisticsPDBj update infoContact PDBjnumon