Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 60 件
5HWZ
DownloadVisualize
BU of 5hwz by Molmil
Crystal structure of nitrophorin 4 D30N mutant with nitrite
分子名称: NITRITE ION, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H, He, C, Lubitz, W.
登録日2016-01-29
公開日2016-05-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferrihemebproteins, the nitrophorins.
Chem Sci, 7, 2016
3MJO
DownloadVisualize
BU of 3mjo by Molmil
Small subunit (R2F) of native ribonucleotide reductase from Corynebacterium ammoniagenes
分子名称: MANGANESE (III) ION, Ribonucleotide reductase subunit R2F
著者Ogata, H, Stolle, P, Stehr, M, Auling, G, Lubitz, W.
登録日2010-04-13
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献A Tyrosyl-Dimanganese Coupled Spin System is the Native Metalloradical Cofactor of the R2F Subunit of the Ribonucleotide Reductase of Corynebacterium ammoniagenes.
J.Am.Chem.Soc., 132, 2010
5H0U
DownloadVisualize
BU of 5h0u by Molmil
Crystal structure of the catalytic domain of membrane type 1 matrix metalloproteinase
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
著者Ogata, H, Decaneto, E, Lubitz, W.
登録日2016-10-07
公開日2017-10-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.239 Å)
主引用文献Solvent water interactions within the active site of the membrane type I matrix metalloproteinase.
Phys Chem Chem Phys, 19, 2017
3MYR
DownloadVisualize
BU of 3myr by Molmil
Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state
分子名称: CHLORIDE ION, FE3-S4 CLUSTER, Hydrogenase (NiFe) small subunit HydA, ...
著者Ogata, H, Kellers, P, Lubitz, W.
登録日2010-05-11
公開日2010-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state).
J.Mol.Biol., 402, 2010
4U9I
DownloadVisualize
BU of 4u9i by Molmil
High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Nishikawa, K, Lubitz, W.
登録日2014-08-06
公開日2015-01-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase.
Nature, 520, 2015
4U9H
DownloadVisualize
BU of 4u9h by Molmil
Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Nishikawa, K, Lubitz, W.
登録日2014-08-06
公開日2015-01-21
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase.
Nature, 520, 2015
3TGC
DownloadVisualize
BU of 3tgc by Molmil
Crystal structure of L130R mutant of Nitrophorin 4 from Rhodnius prolixus complexed with nitrite at pH 7.4
分子名称: NITRITE ION, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H, He, C, Knipp, M.
登録日2011-08-17
公開日2012-08-22
最終更新日2012-09-26
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Insertion of an H-Bonding Residue into the Distal Pocket of the Ferriheme Protein Nitrophorin 4: Effect on Nitrite[BOND]Iron Coordination and Nitrite Disproportionation
Chem.Biodivers., 9, 2012
3MVF
DownloadVisualize
BU of 3mvf by Molmil
Crystal Structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Nitrite at pH 7.4
分子名称: NITRITE ION, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H, He, C, Knipp, M.
登録日2010-05-04
公開日2010-06-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Formation of the complex of nitrite with the ferriheme b beta-barrel proteins nitrophorin 4 and nitrophorin 7.
Biochemistry, 49, 2010
3TGA
DownloadVisualize
BU of 3tga by Molmil
Crystal structure of L130R mutant of Nitrophorin 4 from Rhodnius prolixus at pH 7.4
分子名称: Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H, He, C, Knipp, M.
登録日2011-08-17
公開日2012-05-30
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Guanidine-Ferroheme Coordination in the Mutant Protein Nitrophorin 4(L130R).
Angew.Chem.Int.Ed.Engl., 51, 2012
3TGB
DownloadVisualize
BU of 3tgb by Molmil
Crystal structure of L130R mutant of Nitrophorin 4 from Rhodnius prolixus complexed with imidazole at pH 7.4
分子名称: IMIDAZOLE, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H, He, C, Knipp, M.
登録日2011-08-17
公開日2012-05-30
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Guanidine-Ferroheme Coordination in the Mutant Protein Nitrophorin 4(L130R).
Angew.Chem.Int.Ed.Engl., 51, 2012
5M6J
DownloadVisualize
BU of 5m6j by Molmil
Crystal structure of nitrophorin 7 E27V mutant from Rhodnius prolixus
分子名称: Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2016-10-25
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7.
Sci Rep, 8, 2018
5M6K
DownloadVisualize
BU of 5m6k by Molmil
Crystal structure of nitrophorin 7 E27V mutant from Rhodnius prolixus with imidazole
分子名称: IMIDAZOLE, Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2016-10-25
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7.
Sci Rep, 8, 2018
4XMF
DownloadVisualize
BU of 4xmf by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8 complexed with histamine
分子名称: HISTAMINE, Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
4XMG
DownloadVisualize
BU of 4xmg by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8 complexed with imidazole
分子名称: IMIDAZOLE, Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
4XMD
DownloadVisualize
BU of 4xmd by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8
分子名称: Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
4XME
DownloadVisualize
BU of 4xme by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8 complexed with NO
分子名称: GLYCEROL, NITRIC OXIDE, Nitrophorin-7, ...
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
4XMH
DownloadVisualize
BU of 4xmh by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8 complexed with Gly-Gly-Gly
分子名称: GLY-GLY-GLY, GLYCEROL, Nitrophorin-7, ...
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
4XMC
DownloadVisualize
BU of 4xmc by Molmil
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 5.8
分子名称: Nitrophorin-7, PROTOPORPHYRIN IX CONTAINING FE
著者Ogata, H.
登録日2015-01-14
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.421 Å)
主引用文献Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7.
F1000Res, 4, 2015
1WUH
DownloadVisualize
BU of 1wuh by Molmil
Three-Dimensional Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Structural basis for the activation process of [NiFe] hydrogenase from D.vulgaris Miyazaki F
To be Published
1WUJ
DownloadVisualize
BU of 1wuj by Molmil
Three-Dimensional Structure Of The Ni-B State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUK
DownloadVisualize
BU of 1wuk by Molmil
High resolution Structure Of The Oxidized State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUL
DownloadVisualize
BU of 1wul by Molmil
High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUI
DownloadVisualize
BU of 1wui by Molmil
Ultra-High resolution Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1UBH
DownloadVisualize
BU of 1ubh by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, ...
著者Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
登録日2003-04-04
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBU
DownloadVisualize
BU of 1ubu by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
分子名称: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
登録日2003-04-04
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002

 

123>

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon