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PDB: 99 件
4YK8
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BU of 4yk8 by Molmil
Crystal structure of the Atg101-Atg13 complex from fission yeast
分子名称: Autophagy protein 13, Meiotically up-regulated gene 66 protein
著者Suzuki, H, Noda, N.N.
登録日2015-03-04
公開日2015-06-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation.
Nat.Struct.Mol.Biol., 22, 2015
8H1O
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BU of 8h1o by Molmil
Cryo-EM structure of KpFtsZ-monobody double helical tube
分子名称: Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Mb(Ec/KpFtsZ_S1)
著者Fujita, J, Amesaka, H, Yoshizawa, T, Kuroda, N, Kamimura, N, Hara, M, Inoue, T, Namba, K, Tanaka, S, Matsumura, H.
登録日2022-10-03
公開日2023-08-02
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody.
Nat Commun, 14, 2023
5H9V
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BU of 5h9v by Molmil
Crystal structure of Regnase PIN domain, form I
分子名称: Ribonuclease ZC3H12A, SODIUM ION
著者Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
登録日2015-12-29
公開日2016-03-16
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
5H9W
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BU of 5h9w by Molmil
Crystal structure of Regnase PIN domain, form II
分子名称: Ribonuclease ZC3H12A, SODIUM ION
著者Yokogawa, M, Tsushima, T, Adachi, W, Noda, N.N, Inagaki, F.
登録日2015-12-29
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
5JHF
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BU of 5jhf by Molmil
Crystal structure of Atg13(17BR)-Atg13(17LR)-Atg17-Atg29-Atg31 complex
分子名称: Atg13 17BR, Atg13 17LR, KLTH0C07942p, ...
著者Fujioka, Y, Noda, N.N.
登録日2016-04-21
公開日2016-08-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes.
Dev.Cell, 38, 2016
7VED
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BU of 7ved by Molmil
Crystal structure of GABARAP fused to TEX264 LIR with S272D mutation
分子名称: SULFATE ION, Testis-expressed protein 264,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2021-09-08
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
5JHC
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BU of 5jhc by Molmil
Crystal structure of the self-assembled propeptides from Ape1
分子名称: Vacuolar aminopeptidase 1
著者Yamasaki, A, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
5JGE
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BU of 5jge by Molmil
Crystal structure of Atg19 coiled-coil complexed with Ape1 propeptide
分子名称: Ape1 propeptide, Autophagy-related protein 19
著者Watanabe, Y, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
7F2X
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BU of 7f2x by Molmil
Crystal structure of MEK1 C121S mutant
分子名称: MEK1 F11, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Fujioka, Y, Noda, N.N.
登録日2021-06-15
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.007 Å)
主引用文献Qualitative differences in disease-associated MEK mutants reveal molecular signatures and aberrant signaling-crosstalk in cancer.
Nat Commun, 13, 2022
4LAC
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BU of 4lac by Molmil
Crystal Structure of Protein Phosphatase 2A (PP2A) and PP2A phosphatase activator (PTPA) complex with ATPgammaS
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
著者Guo, F, Stanevich, V, Wlodarchak, N, Satyshur, K.A, Xing, Y.
登録日2013-06-19
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Structural basis of PP2A activation by PTPA, an ATP-dependent activation chaperone.
Cell Res., 24, 2014
5YEC
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BU of 5yec by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex in form II
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
著者Yamaguchi, M, Satoo, K, Noda, N.N.
登録日2017-09-16
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.147 Å)
主引用文献Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
J. Mol. Biol., 430, 2018
6AAG
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BU of 6aag by Molmil
Crystal structure of budding yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Transmembrane protein 184 homolog YKR051W,Autophagy-related protein 8
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.445 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6AAF
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BU of 6aaf by Molmil
Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Autophagy-related protein 8, Transmembrane protein 184 homolog C30D11.06c
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.197 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
7YDO
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BU of 7ydo by Molmil
Crystal structure of Atg44
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Uncharacterized protein C26A3.14c
著者Maruyama, T, Noda, N.N.
登録日2022-07-04
公開日2023-05-17
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献The mitochondrial intermembrane space protein mitofissin drives mitochondrial fission required for mitophagy.
Mol.Cell, 83, 2023
7YO8
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BU of 7yo8 by Molmil
Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2
分子名称: Transmembrane protein 184 homolog C30D11.06c,Gamma-aminobutyric acid receptor-associated protein-like 2
著者Yamasaki, A, Noda, N.N.
登録日2022-08-01
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.805 Å)
主引用文献Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7YO9
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BU of 7yo9 by Molmil
Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP
分子名称: ISOPROPYL ALCOHOL, PHOSPHATE ION, Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2022-08-01
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7W36
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BU of 7w36 by Molmil
Crystal structure of human Atg5 complexed with a stapled peptide
分子名称: Autophagy protein 5, Stapled ATG16L1-derived peptide
著者Kurata, I, Matoba, K, Noda, N.N.
登録日2021-11-25
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Targeting the ATG5-ATG16L1 Protein-Protein Interaction with a Hydrocarbon-Stapled Peptide Derived from ATG16L1 for Autophagy Inhibition.
J.Am.Chem.Soc., 144, 2022
6A9E
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BU of 6a9e by Molmil
Crystal structure of the N-terminal domain of Atg2
分子名称: Endolysin,Autophagy-related protein 2
著者Osawa, T, Noda, N.N.
登録日2018-07-13
公開日2019-03-20
最終更新日2019-04-17
実験手法X-RAY DIFFRACTION (3.205 Å)
主引用文献Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
6A9J
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BU of 6a9j by Molmil
Crystal structure of the PE-bound N-terminal domain of Atg2
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Endolysin,Autophagy-related protein 2
著者Osawa, T, Noda, N.N.
登録日2018-07-13
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
5AZH
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BU of 5azh by Molmil
Crystal structure of LGG-2 fused with an EEEWEEL peptide
分子名称: EEEWEEL peptide,Protein lgg-2, MAGNESIUM ION
著者Watanabe, Y, Fujioka, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
5AZG
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BU of 5azg by Molmil
Crystal structure of LGG-1 complexed with a UNC-51 peptide
分子名称: CADMIUM ION, Protein lgg-1, Serine/threonine-protein kinase unc-51
著者Watanabe, Y, Fujioka, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
7WH3
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BU of 7wh3 by Molmil
Solution structure of human stomatin SPFH domain in a phosphate buffer
分子名称: Stomatin
著者Kataoka, K, Tenno, T, Goda, N, Hibino, E, Hiroaki, H.
登録日2021-12-29
公開日2022-06-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A cryptic phosphate-binding pocket on the SPFH domain of human stomatin that regulates a novel fibril-like self-assembly
Curr Res Struct Biol, 4, 2022
5AZF
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BU of 5azf by Molmil
Crystal structure of LGG-1 complexed with a WEEL peptide
分子名称: CADMIUM ION, Protein lgg-1, SULFATE ION, ...
著者Watanabe, Y, Noda, N.N.
登録日2015-10-05
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Mol.Cell, 60, 2015
7D0I
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BU of 7d0i by Molmil
Cryo-EM structure of Schizosaccharomyces pombe Atg9
分子名称: Autophagy-related protein 9, Lauryl Maltose Neopentyl Glycol
著者Matoba, K, Tsutsumi, A, Kikkawa, M, Noda, N.N.
登録日2020-09-10
公開日2020-10-28
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion.
Nat.Struct.Mol.Biol., 27, 2020
7EU4
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BU of 7eu4 by Molmil
Crystal structure of plant ATG12 complexed with the AIM12 of ATG3
分子名称: AIM12 from Autophagy-related protein 3, Ubiquitin-like protein ATG12B
著者Matoba, K, Noda, N.N.
登録日2021-05-16
公開日2021-07-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Atg12-Interacting Motif Is Crucial for E2-E3 Interaction in Plant Atg8 System.
Biol.Pharm.Bull., 44, 2021

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