Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 167 件
3AWZ
DownloadVisualize
BU of 3awz by Molmil
Crystal structure of Streptomyces tyrosinase in a complex with caddie H97Q mutant soaked in a Cu(II)-containing solution for 80 hr
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2011-03-26
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein
J.Biol.Chem., 286, 2011
3AWU
DownloadVisualize
BU of 3awu by Molmil
Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 40 h
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2011-03-26
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein
J.Biol.Chem., 286, 2011
3AWX
DownloadVisualize
BU of 3awx by Molmil
Crystal structure of Streptomyces tyrosinase in a complex with caddie H82Q mutant soaked in a Cu(II)-containing solution for 80 hr
分子名称: COPPER (II) ION, MelC, NITRATE ION, ...
著者Matoba, Y, Sugiyama, M.
登録日2011-03-26
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein
J.Biol.Chem., 286, 2011
3AZO
DownloadVisualize
BU of 3azo by Molmil
Crystal structure of puromycin hydrolase
分子名称: Aminopeptidase, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2011-05-27
公開日2011-07-27
最終更新日2011-09-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3AZP
DownloadVisualize
BU of 3azp by Molmil
Crystal structure of puromycin hydrolase S511A mutant
分子名称: Aminopeptidase, SULFATE ION
著者Matoba, Y, Sugiyama, M.
登録日2011-05-27
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
3AZQ
DownloadVisualize
BU of 3azq by Molmil
Crystal structure of puromycin hydrolase S511A mutant complexed with PGG
分子名称: Aminopeptidase, SULFATE ION, tripeptide PGG
著者Matoba, Y, Sugiyama, M.
登録日2011-05-27
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold
Proteins, 79, 2011
2DVJ
DownloadVisualize
BU of 2dvj by Molmil
phosphorylated Crk-II
分子名称: V-crk sarcoma virus CT10 oncogene homolog, isoform a
著者Kobashigawa, Y, Inagaki, F.
登録日2006-07-31
公開日2007-05-08
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2AHL
DownloadVisualize
BU of 2ahl by Molmil
Crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein
分子名称: CADDIE PROTEIN ORF378, COPPER (I) ION, NITRATE ION, ...
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-07-28
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
2AHK
DownloadVisualize
BU of 2ahk by Molmil
Crystal structure of the met-form of the copper-bound Streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein obtained by soking in cupric sulfate for 6 months
分子名称: CADDIE PROTEIN ORF378, COPPER (II) ION, NITRATE ION, ...
著者Matoba, Y, Kumagai, T, Yamamoto, A, Yoshitsu, H, Sugiyama, M.
登録日2005-07-28
公開日2006-01-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
J.Biol.Chem., 281, 2006
6LDO
DownloadVisualize
BU of 6ldo by Molmil
Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with L-serine
分子名称: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, Cystathionine gamma-lyase, PHOSPHATE ION
著者Oda, K, Matoba, Y.
登録日2019-11-22
公開日2020-10-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
6LE4
DownloadVisualize
BU of 6le4 by Molmil
Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with cystathionine
分子名称: (2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid, Cystathionine gamma-lyase, PHOSPHATE ION
著者Oda, K, Matoba, Y.
登録日2019-11-24
公開日2020-10-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
1VA2
DownloadVisualize
BU of 1va2 by Molmil
Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2)
分子名称: Transcription factor Sp1, ZINC ION
著者Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y.
登録日2004-02-07
公開日2005-02-08
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
6LUH
DownloadVisualize
BU of 6luh by Molmil
High resolution structure of N(omega)-hydroxy-L-arginine hydrolase
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2020-01-28
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of an Nomega-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.
Acta Crystallogr D Struct Biol, 76, 2020
2E5D
DownloadVisualize
BU of 2e5d by Molmil
Crystal structure of Human NMPRTase complexed with nicotinamide
分子名称: NICOTINAMIDE, Nicotinamide phosphoribosyltransferase
著者Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
登録日2006-12-20
公開日2007-12-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
2E5C
DownloadVisualize
BU of 2e5c by Molmil
Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Nicotinamide phosphoribosyltransferase
著者Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
登録日2006-12-20
公開日2007-12-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
2E5E
DownloadVisualize
BU of 2e5e by Molmil
Solution Structure of Variable-type Domain of Human Receptor for Advanced Glycation Endproducts
分子名称: Advanced glycosylation end product-specific receptor
著者Matsumoto, S, Yoshida, T, Yasumatsu, I, Yamamoto, H, Kobayashi, Y, Ohkubo, T.
登録日2006-12-20
公開日2007-12-25
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Solution Structure of Variable-type Domain of Human Receptor for Advanced Glycation Endproducts
to be published
4U4P
DownloadVisualize
BU of 4u4p by Molmil
Crystal structure of the human condensin SMC hinge domain heterodimer with short coiled coils
分子名称: Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
著者Uchiyama, S, Kawahara, K, Hosokawa, Y, Fukakusa, S, Oki, H, Nakamura, S, Noda, M, Takino, R, Miyahara, Y, Maruno, T, Kobayashi, Y, Ohkubo, T, Fukui, K.
登録日2014-07-24
公開日2015-08-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
1AYG
DownloadVisualize
BU of 1ayg by Molmil
SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
分子名称: CYTOCHROME C-552, HEME C
著者Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y.
登録日1997-11-04
公開日1998-11-25
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
8WKO
DownloadVisualize
BU of 8wko by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the closed form
分子名称: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE, ...
著者Oda, K, Matoba, Y.
登録日2023-09-28
公開日2024-02-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
7YML
DownloadVisualize
BU of 7yml by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, BACTERIOCHLOROPHYLL A, ...
著者Tani, K, Kanno, R, Ji, X.-C, Satoh, I, Kobayashi, Y, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Mizoguchi, A, Humbel, B.M, Madigan, M.T, Wang-Otomo, Z.-Y.
登録日2022-07-28
公開日2023-02-22
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.
Nat Commun, 14, 2023
8WKR
DownloadVisualize
BU of 8wkr by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form
分子名称: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE
著者Oda, K, Matoba, Y.
登録日2023-09-28
公開日2024-02-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
9IQ9
DownloadVisualize
BU of 9iq9 by Molmil
Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86
分子名称: COPPER (I) ION, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Oda, K, Matoba, Y.
登録日2024-07-12
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8JLB
DownloadVisualize
BU of 8jlb by Molmil
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-02
公開日2023-10-04
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.36 Å)
主引用文献Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
6LOS
DownloadVisualize
BU of 6los by Molmil
Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide.
分子名称: Collagen model peptide, type I, alpha 1, ...
著者Kawahara, K, Maruno, T, Oki, H, Yoshida, T, Ohkubo, T, Koide, T, Kobayashi, Y.
登録日2020-01-07
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.476 Å)
主引用文献Spatiotemporal regulation of PEDF signaling by type I collagen remodeling.
Proc.Natl.Acad.Sci.USA, 117, 2020
8JL9
DownloadVisualize
BU of 8jl9 by Molmil
Cryo-EM structure of the human nucleosome with scFv
分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-02
公開日2023-10-04
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon