Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 7397 results

2YHB
DownloadVisualize
BU of 2yhb by Molmil
Crystal Structure of the N. crassa QDE-2 AGO MID-PIWI Domains
Descriptor: GLYCEROL, POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2, SULFATE ION
Authors:Boland, A, Weichenrieder, O.
Deposit date:2011-04-27
Release date:2011-06-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal Structure of the Mid-Piwi Lobe of a Eukaryotic Argonaute Protein
Proc.Natl.Acad.Sci.USA, 108, 2011
4O9Y
DownloadVisualize
BU of 4o9y by Molmil
Crystal Structure of TcdA1
Descriptor: TcdA1
Authors:Meusch, D, Gatsogiannis, C, Efremov, R.G, Lang, A.E, Hofnagel, O, Vetter, I.R, Aktories, K, Raunser, S.
Deposit date:2014-01-03
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.502 Å)
Cite:Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
2RAI
DownloadVisualize
BU of 2rai by Molmil
The PX-BAR membrane remodeling unit of Sorting Nexin 9
Descriptor: Sorting nexin-9
Authors:Pylypenko, O, Lundmark, R, Rasmuson, E, Carlsson, S.R, Rak, A.
Deposit date:2007-09-16
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The PX-BAR membrane-remodeling unit of sorting nexin 9
Embo J., 26, 2007
4OAJ
DownloadVisualize
BU of 4oaj by Molmil
Crystal structure of the complex between SAP97 PDZ2 and 5HT2A receptor peptide
Descriptor: 5-hydroxytryptamine receptor 2A peptide, Disks large homolog 1
Authors:Pandalaneni, S, Dorr, L, Mayans, O, Lian, L.-Y.
Deposit date:2014-01-04
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the complex between SAP97 PDZ2 and 5HT2A receptor peptide
To be Published
8QXX
DownloadVisualize
BU of 8qxx by Molmil
HCMV DNA polymerase processivity factor UL44 phosphorylated NLS 410-433 bound to mouse importin alpha 2
Descriptor: DNA polymerase processivity factor, Importin subunit alpha-1
Authors:Cross, E.M, Marin, O, Ariawan, D, Aragao, D, Cozza, G, Di Iorio, E, Forwood, J.K, Alvisi, G.
Deposit date:2023-10-25
Release date:2023-11-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural determinants of phosphorylation-dependent nuclear transport of HCMV DNA polymerase processivity factor UL44.
Febs Lett., 598, 2024
8QXW
DownloadVisualize
BU of 8qxw by Molmil
HCMV DNA polymerase processivity factor UL44 unphosphorylated NLS 410-433 bound to mouse importin alpha 2
Descriptor: DNA polymerase processivity factor, Importin subunit alpha-1
Authors:Cross, E.M, Marin, O, Ariawan, D, Aragao, D, Cozza, G, Di Iorio, E, Forwood, J.K, Alvisi, G.
Deposit date:2023-10-25
Release date:2023-11-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural determinants of phosphorylation-dependent nuclear transport of HCMV DNA polymerase processivity factor UL44.
Febs Lett., 598, 2024
2WWY
DownloadVisualize
BU of 2wwy by Molmil
Structure of human RECQ-like helicase in complex with a DNA substrate
Descriptor: 1,2-ETHANEDIOL, 5'-D(*DA DG DC DG DT DC DG DA DG DA DT DC DCP)-3', ATP-DEPENDENT DNA HELICASE Q1, ...
Authors:Pike, A.C.W, Zhang, Y, Schnecke, C, Chaikuad, A, Krojer, T, Cooper, C.D.O, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2009-10-30
Release date:2009-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Recq1 Helicase-Driven DNA Unwinding, Annealing, and Branch Migration: Insights from DNA Complex Structures
Proc.Natl.Acad.Sci.USA, 112, 2015
8QNN
DownloadVisualize
BU of 8qnn by Molmil
Crystal structure of a Class A beta-lactamase from Nocardia cyriacigeorgica
Descriptor: Beta-lactamase, CITRATE ANION
Authors:Feuillard, J, Couston, J, Benito, Y, Hodille, E, Dumitrescu, O, Blaise, M.
Deposit date:2023-09-27
Release date:2024-01-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Biochemical and structural characterization of a class A beta-lactamase from Nocardia cyriacigeorgica.
Acta Crystallogr.,Sect.F, 80, 2024
4P3J
DownloadVisualize
BU of 4p3j by Molmil
Apo inward-facing state of the glutamate transporter homologue GltPh in alkali-free conditions
Descriptor: GltPh, MERCURY (II) ION
Authors:Verdon, G, Boudker, O.
Deposit date:2014-03-08
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
Elife, 3, 2014
4PDN
DownloadVisualize
BU of 4pdn by Molmil
Crystal structure of E. coli YfcM
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2014-04-19
Release date:2015-03-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
4PH2
DownloadVisualize
BU of 4ph2 by Molmil
mature N-terminal domain of capsid protein from bovine leukemia virus
Descriptor: BLV capsid - N-terminal domain, GLYCEROL, SULFATE ION
Authors:Trajtenberg, F, Obal, G, Pritsch, O, Buschiazzo, A.
Deposit date:2014-05-03
Release date:2015-06-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:STRUCTURAL VIROLOGY. Conformational plasticity of a native retroviral capsid revealed by x-ray crystallography.
Science, 349, 2015
2RL9
DownloadVisualize
BU of 2rl9 by Molmil
Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 6.5 bound to trimannoside
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-O-phosphono-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose, Cation-dependent mannose-6-phosphate receptor, ...
Authors:Olson, L.J, Hindsgaul, O, Dahms, N.M, Kim, J.-J.P.
Deposit date:2007-10-18
Release date:2008-02-12
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor.
J.Biol.Chem., 283, 2008
5CUO
DownloadVisualize
BU of 5cuo by Molmil
Structure of Rhodopseudomonas palustris PduL - CoA bound form
Descriptor: COENZYME A, Phosphate propanoyltransferase, ZINC ION
Authors:Sutter, M, Erbilgin, O, Kerfeld, C.A.
Deposit date:2015-07-24
Release date:2016-03-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.544 Å)
Cite:The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle.
Plos Biol., 14, 2016
2RO1
DownloadVisualize
BU of 2ro1 by Molmil
NMR Solution Structures of Human KAP1 PHD finger-bromodomain
Descriptor: Transcription intermediary factor 1-beta, ZINC ION
Authors:Zeng, L, Yap, K.L, Ivanov, A.V, Wang, X, Mujtaba, S, Plotnikova, O, Rauscher, F.J.
Deposit date:2008-03-04
Release date:2008-05-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural insights into human KAP1 PHD finger-bromodomain and its role in gene silencing
Nat.Struct.Mol.Biol., 15, 2008
5DIE
DownloadVisualize
BU of 5die by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a trifluoro-substituted A-CD ring estrogen derivative (1S,3aR,5S,7aS)-7a-methyl-5-(2,3,5-trifluoro-4-hydroxyphenyl)octahydro-1H-inden-1-ol
Descriptor: (1S,3aR,5S,7aS)-7a-methyl-5-(2,3,5-trifluoro-4-hydroxyphenyl)octahydro-1H-inden-1-ol, Estrogen receptor, Nuclear receptor coactivator 2
Authors:Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
Deposit date:2015-08-31
Release date:2016-05-04
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
2RAJ
DownloadVisualize
BU of 2raj by Molmil
SO4 bound PX-BAR membrane remodeling unit of Sorting Nexin 9
Descriptor: SULFATE ION, Sorting nexin-9
Authors:Pylypenko, O, Lundmark, R, Rasmuson, E, Carlsson, S.R, Rak, A.
Deposit date:2007-09-16
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The PX-BAR membrane-remodeling unit of sorting nexin 9
Embo J., 26, 2007
5CRF
DownloadVisualize
BU of 5crf by Molmil
Structure of the penicillin-binding protein PonA1 from Mycobacterium Tuberculosis
Descriptor: PHOSPHATE ION, Penicillin-binding protein 1A
Authors:Filippova, E.V, Wawrzak, Z, Kiryukhina, O, Kieser, K, Endres, M, Rubin, E, Sacchettini, J, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)
Deposit date:2015-07-22
Release date:2016-05-04
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the transpeptidase domain of the Mycobacterium tuberculosis penicillin-binding protein PonA1 reveal potential mechanisms of antibiotic resistance.
Febs J., 283, 2016
8R35
DownloadVisualize
BU of 8r35 by Molmil
CryoEM structure of the asymmetric Pho90 dimer from yeast without substrates.
Descriptor: Low-affinity phosphate transporter PHO90
Authors:Schneider, S, Kuehlbrandt, W, Yildiz, O.
Deposit date:2023-11-08
Release date:2024-04-24
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism.
Structure, 32, 2024
8R34
DownloadVisualize
BU of 8r34 by Molmil
CryoEM structure of the symmetric Pho90 dimer from yeast with substrates.
Descriptor: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, Low-affinity phosphate transporter PHO90, PHOSPHATE ION, ...
Authors:Schneider, S, Kuehlbrandt, W, Yildiz, O.
Deposit date:2023-11-08
Release date:2024-04-24
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism.
Structure, 32, 2024
2RL7
DownloadVisualize
BU of 2rl7 by Molmil
Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 4.8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CACODYLATE ION, ...
Authors:Olson, L.J, Hindsgaul, O, Kim, J.-J.P, Dahms, N.M.
Deposit date:2007-10-18
Release date:2008-02-12
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor.
J.Biol.Chem., 283, 2008
4P6H
DownloadVisualize
BU of 4p6h by Molmil
Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue GltPh
Descriptor: GltPh, MERCURY (II) ION, THALLIUM (I) ION
Authors:Verdon, G, Boudker, O.
Deposit date:2014-03-24
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.08 Å)
Cite:Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
Elife, 3, 2014
5D7N
DownloadVisualize
BU of 5d7n by Molmil
Crystal structure of human Sirt3 at an improved resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, MAGNESIUM ION, ...
Authors:Rumpf, T, Gerhardt, S, Einsle, O, Jung, M.
Deposit date:2015-08-14
Release date:2015-12-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking.
Acta Crystallogr.,Sect.F, 71, 2015
8R9X
DownloadVisualize
BU of 8r9x by Molmil
Local refinement of the PDCoV spike glycoprotein ectodomain in complex with the 22C10 antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Debski-Antoniak, O, Hurdiss, D.L.
Deposit date:2023-11-30
Release date:2024-06-05
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein.
Nat Commun, 15, 2024
8RB9
DownloadVisualize
BU of 8rb9 by Molmil
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, NADH added
Descriptor: DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Zhang, L, Einsle, O.
Deposit date:2023-12-03
Release date:2024-06-26
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Architecture of the RNF1 complex that drives biological nitrogen fixation.
Nat.Chem.Biol., 20, 2024
8RBM
DownloadVisualize
BU of 8rbm by Molmil
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, ferricyanide oxidized
Descriptor: DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Zhang, L, Einsle, O.
Deposit date:2023-12-04
Release date:2024-06-26
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Architecture of the RNF1 complex that drives biological nitrogen fixation.
Nat.Chem.Biol., 20, 2024

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon