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PDB: 72 件
6IPV
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BU of 6ipv by Molmil
Crystal structure of CqsB2 from Streptomyces exfoliatus 2419-SVT2 (apo form)
分子名称: CqsB2
著者Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
登録日2018-11-05
公開日2019-10-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.
Angew.Chem.Int.Ed.Engl., 58, 2019
6IPW
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BU of 6ipw by Molmil
Crystal structure of CqsB2 from Streptomyces exfoliatus in complex with the product, 1-(2-hydroxypropyl)-2-methyl-carbazole-3,4-dione
分子名称: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, CqsB2
著者Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
登録日2018-11-05
公開日2019-10-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.
Angew.Chem.Int.Ed.Engl., 58, 2019
2Z1Y
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BU of 2z1y by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-leucine), from Thermus thermophilus HB27
分子名称: Alpha-aminodipate aminotransferase, LEUCINE, PYRIDOXAL-5'-PHOSPHATE
著者Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2007-05-16
公開日2008-06-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mechanism of broad substrate specificity of alpha-aminoadipate aminotransferase from Thermus thermophilus
To be Published
3CBF
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BU of 3cbf by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase, from Thermus thermophilus HB27
分子名称: (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid, Alpha-aminodipate aminotransferase
著者Tomita, T, Miyazaki, T, Miyagawa, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2008-02-21
公開日2009-01-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Mechanism for multiple-substrates recognition of alpha-aminoadipate aminotransferase from Thermus thermophilus
Proteins, 2008
1X0L
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BU of 1x0l by Molmil
Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus
分子名称: Homoisocitrate dehydrogenase
著者Miyazaki, J, Asada, K, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
登録日2005-03-24
公開日2005-10-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structure of Tetrameric Homoisocitrate Dehydrogenase from an Extreme Thermophile, Thermus thermophilus: Involvement of Hydrophobic Dimer-Dimer Interaction in Extremely High Thermotolerance
J.Bacteriol., 187, 2005
3AH3
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BU of 3ah3 by Molmil
Crystal structure of LR5-1, 3-isopropylmalate dehydrogenase created by directed evolution
分子名称: 1,2-ETHANEDIOL, Homoisocitrate dehydrogenase, SULFATE ION
著者Tomita, T, Suzuki, Y, Kuzuyama, T, Nishiyama, M.
登録日2010-04-13
公開日2011-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Enhancement of the latent 3-isopropylmalate dehydrogenase activity of promiscuous homoisocitrate dehydrogenase by directed evolution
Biochem.J., 431, 2010
5B6Q
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BU of 5b6q by Molmil
Crystal structure of monomeric cytochrome c5 from Shewanella violacea
分子名称: HEME C, IMIDAZOLE, Soluble cytochrome cA
著者Masanari, M, Fujii, S, Kawahara, K, Oki, H, Tsujino, H, Maruno, T, Kobayashi, Y, Ohkubo, T, Nishiyama, M, Harada, Y, Wakai, S, Sambongi, Y.
登録日2016-06-01
公開日2016-10-19
最終更新日2019-10-02
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Comparative study on stabilization mechanism of monomeric cytochrome c5 from deep-sea piezophilic Shewanella violacea
Biosci.Biotechnol.Biochem., 2016
6ITD
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BU of 6itd by Molmil
Crystal structure of BioU (K124A) from Synechocystis sp.PCC6803 in complex with the analog of reaction intermediate, 3-(1-aminoethyl)-nonanedioic acid
分子名称: 3-(1-AMINOETHYL)NONANEDIOIC ACID, Slr0355 protein
著者Sakaki, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2018-11-21
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
3AOE
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BU of 3aoe by Molmil
Crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus (Leu bound form)
分子名称: Glutamate dehydrogenase, LEUCINE
著者Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2010-09-27
公開日2011-09-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献An unique allosteric regulation revealed by hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
3AOG
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BU of 3aog by Molmil
Crystal structure of glutamate dehydrogenase (GdhB) from Thermus thermophilus (Glu bound form)
分子名称: AMMONIUM ION, GLUTAMIC ACID, Glutamate dehydrogenase, ...
著者Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2010-09-28
公開日2011-09-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An unique allosteric regulation revealed by crystal structure of hetero-hexameric glutamate dehydrogenase from Thermus thermophilus
To be Published
6IR4
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BU of 6ir4 by Molmil
Crystal structure of BioU from Synechocystis sp.PCC6803 (apo form)
分子名称: Slr0355 protein
著者Sakaki, K, Oishi, K, Shimizu, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2018-11-10
公開日2020-01-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6K36
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BU of 6k36 by Molmil
Crystal structure of BioU from Synechocystis sp.PCC6803 conjugated with DAPA
分子名称: (8S)-8-azanylnonanoic acid, Slr0355 protein
著者Sakaki, K, Tomita, T, Nishiyama, M.
登録日2019-05-16
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
6K37
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BU of 6k37 by Molmil
Crystal structure of BioU (K124A) from Synechocystis sp.PCC6803 in complex with NAD+ and the analog of reaction intermediate, 3-(1-aminoethyl)-nonanedioic acid
分子名称: (3R)-3-[(1R)-1-azanylethyl]nonanedioic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Slr0355 protein
著者Sakaki, K, Tomita, T, Nishiyama, M.
登録日2019-05-16
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol., 16, 2020
3VV5
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BU of 3vv5 by Molmil
Crystal structure of TTC0807 complexed with (S)-2-aminoethyl-L-cysteine (AEC)
分子名称: Amino acid ABC transporter, binding protein, L-THIALYSINE, ...
著者Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
登録日2012-07-16
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVD
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BU of 3vvd by Molmil
Crystal structure of TTC0807 complexed with Ornithine
分子名称: Amino acid ABC transporter, binding protein, L-ornithine
著者Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
登録日2012-07-21
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVE
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BU of 3vve by Molmil
Crystal structure of TTC0807 complexed with Lysine
分子名称: Amino acid ABC transporter, binding protein, LYSINE, ...
著者Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
登録日2012-07-21
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
3VVF
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BU of 3vvf by Molmil
Crystal structure of TTC0807 complexed with Arginine
分子名称: ARGININE, Amino acid ABC transporter, binding protein, ...
著者Tomita, T, Kanemaru, Y, Hasebe, F, Kuzuyama, T, Nishiyama, M.
登録日2012-07-21
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Two ATP-Binding Cassette Transporters Involved in (S)-2-Aminoethyl-Cysteine Uptake in Thermus thermophilus
J.Bacteriol., 195, 2013
2ZYF
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BU of 2zyf by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-01-20
公開日2009-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus
J.Biol.Chem., 2009
2ZYJ
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BU of 2zyj by Molmil
Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-glutamate), from Thermus thermophilus HB27
分子名称: Alpha-aminodipate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
著者Ouchi, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-01-26
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Dual roles of a conserved pair, Arg23 and Ser20, in recognition of multiple substrates in alpha-aminoadipate aminotransferase from Thermus thermophilus.
Biochem.Biophys.Res.Commun., 388, 2009
3A9I
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BU of 3a9i by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys
分子名称: COBALT (II) ION, Homocitrate synthase, LYSINE
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-10-28
公開日2009-12-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZTK
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BU of 2ztk by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2008-10-06
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZTJ
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BU of 2ztj by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate
分子名称: 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase
著者Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2008-10-06
公開日2009-10-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
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