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PDB: 315 results
1VBK
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Crystal structure of PH1313 from Pyrococcus horikoshii Ot3
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, hypothetical protein PH1313
Authors:Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-27
Release date:2005-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Purification, crystallization and preliminary crystallographic analysis of the putative thiamine-biosynthesis protein PH1313 from Pyrococcus horikoshii OT3
Acta Crystallogr.,Sect.F, 63, 2007
1V6S
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BU of 1v6s by Molmil
Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8
Descriptor: GLYCEROL, Phosphoglycerate kinase, SODIUM ION
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-04
Release date:2003-12-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8
To be Published
1WW8
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BU of 1ww8 by Molmil
Crystal Structure of malic enzyme from Pyrococcus horikoshii Ot3
Descriptor: malate oxidoreductase
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-04
Release date:2006-03-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of malic enzyme from Pyrococcus horikoshii Ot3
To be Published
1WL8
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BU of 1wl8 by Molmil
Crystal structure of PH1346 protein from Pyrococcus horikoshii
Descriptor: ACETIC ACID, CHLORIDE ION, GMP synthase [glutamine-hydrolyzing] subunit A
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-21
Release date:2005-08-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of Glutamide Amido Transferase from Pyrococcus horikoshii OT3
To be Published
1WXQ
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BU of 1wxq by Molmil
Crystal Structure of GTP binding protein from Pyrococcus horikoshii OT3
Descriptor: GTP-binding protein
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-29
Release date:2006-04-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of GTP binding protein from Pyrococcus horikoshii OT3
To be Published
1WU2
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BU of 1wu2 by Molmil
Crystal Structure of molybdopterin biosynthesis moeA protein from Pyrococcus horikoshii OT3
Descriptor: molybdopterin biosynthesis moeA protein
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-11-30
Release date:2004-12-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of molybdopterin biosynthesis moeA protein from Pyrococcus horikoshii OT3
To be Published
1X1E
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BU of 1x1e by Molmil
Crystal Structure of TT0495 protein from Thermus thermophilus HB8
Descriptor: 2-deoxy-D-gluconate 3-dehydrogenase
Authors:Lokanath, N.K, Terao, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-04
Release date:2006-07-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal Structure of TT0495 protein from Thermus thermophilus HB8
To be Published
1XKV
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BU of 1xkv by Molmil
Crystal Structure Of ATP-Dependent Phosphoenolpyruvate Carboxykinase From Thermus thermophilus HB8
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent phosphoenolpyruvate carboxykinase, CALCIUM ION, ...
Authors:Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-29
Release date:2005-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8 showing the structural basis of induced fit and thermostability.
Acta Crystallogr.,Sect.D, 61, 2005
3W59
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Crystal structure of Galectin-1 in the lactose-unbound state(P212121)
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Galectin-1, ...
Authors:Saburi, H, Tanaka, T, Kunishima, N.
Deposit date:2013-01-26
Release date:2014-01-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Galectin-1 in the lactose-unbound state
To be Published
3W58
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Crystal structure of Galectin-1 in the lactose-unbound state(P21)
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Galectin-1, ...
Authors:Saburi, H, Tanaka, T, Kunishima, N.
Deposit date:2013-01-25
Release date:2014-01-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of Galectin-1 in the lactose-unbound state
To be Published
1UG6
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BU of 1ug6 by Molmil
Structure of beta-glucosidase at atomic resolution from thermus thermophilus HB8
Descriptor: GLYCEROL, beta-glycosidase
Authors:Lokanath, N.K, Shiromizu, I, Miyano, M, Yokoyama, S, Kuramitsu, S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-12
Release date:2003-06-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Structure of Beta-Glucosidase at Atomic Resolution from Thermus Thermophilus Hb8
To be Published
1V7R
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BU of 1v7r by Molmil
Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3
Descriptor: CITRIC ACID, hypothetical protein PH1917
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-22
Release date:2003-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes.
J.Mol.Biol., 375, 2008
6KIQ
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BU of 6kiq by Molmil
Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT
Descriptor: Alpha tubulin, Dynein heavy chain, cytoplasmic, ...
Authors:Komori, Y, Nishida, N, Shimada, I, Kikkawa, M.
Deposit date:2019-07-19
Release date:2020-03-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
6KIO
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BU of 6kio by Molmil
Complex of yeast cytoplasmic dynein MTBD-High and MT without DTT
Descriptor: Dynein heavy chain, cytoplasmic, Tubulin alpha-1A chain, ...
Authors:Komori, Y, Nishida, N, Shimada, I, Kikkawa, M.
Deposit date:2019-07-19
Release date:2020-03-04
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Structural basis for two-way communication between dynein and microtubules.
Nat Commun, 11, 2020
1V9S
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BU of 1v9s by Molmil
Crystal structure of TT0130 protein from Thermus thermophilus HB8
Descriptor: SULFATE ION, uracil phosphoribosyltransferase
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-29
Release date:2005-03-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of uracil phosphoribosyltransferase from Thermus thermophilus HB8
To be Published
1V5V
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BU of 1v5v by Molmil
Crystal Structure of a Component of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 A Resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, aminomethyltransferase
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-26
Release date:2004-10-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a component of glycine cleavage system: T-protein from Pyrococcus horikoshii OT3 at 1.5 A resolution
Proteins, 58, 2004
1V9N
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BU of 1v9n by Molmil
Structure of Malate Dehydrogenase from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-26
Release date:2005-03-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Malate Dehydrogenase from Pyrococcus horikoshii OT3
To be Published
3AH9
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BU of 3ah9 by Molmil
Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution
Descriptor: ACETIC ACID, AZIDE ION, collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Hongo, C, Hosaka, N, Nishino, N.
Deposit date:2010-04-22
Release date:2011-04-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of (Pro-Pro-Gly)9
To be Published
1UB3
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BU of 1ub3 by Molmil
Crystal Structure of Tetrameric Structure of Aldolase from thermus thermophilus HB8
Descriptor: 1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE, Aldolase protein
Authors:Lokanath, N.K, Miyano, M, Yokoyama, S, Kuramitsu, S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-28
Release date:2003-04-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability.
Acta Crystallogr.,Sect.D, 60, 2004
1WP4
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BU of 1wp4 by Molmil
Structure of TT368 protein from Thermus Thermophilus HB8
Descriptor: 3-hydroxyisobutyrate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-30
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8
J.Mol.Biol., 352, 2005
2ZBN
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BU of 2zbn by Molmil
Crystal structure of PH1033 from Pyrococcus horikoshii OT3
Descriptor: UPF0310 protein PH1033
Authors:Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-26
Release date:2008-04-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites.
Acta Crystallogr.,Sect.D, 64, 2008
2ZSG
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BU of 2zsg by Molmil
Crystal structure of X-Pro aminopeptidase from Thermotoga maritima MSB8
Descriptor: Aminopeptidase P, putative, CHLORIDE ION, ...
Authors:Mizutani, H, Kunishima, N.
Deposit date:2008-09-10
Release date:2008-10-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of X-Pro aminopeptidase from Thermotoga maritima MSB8
To be Published
3AA9
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BU of 3aa9 by Molmil
Crystal Structure Analysis of the Mutant CutA1 (E61V) from E. coli
Descriptor: Divalent-cation tolerance protein cutA
Authors:Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K.
Deposit date:2009-11-12
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design
J.Biochem., 148, 2010
3AA8
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BU of 3aa8 by Molmil
Crystal Structure Analysis of the Mutant CutA1 (S11V/E61V) from E. coli
Descriptor: Divalent-cation tolerance protein cutA
Authors:Matsuura, Y, Tanaka, T, Bagautdinov, B, Kunishima, N, Yutani, K.
Deposit date:2009-11-12
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design
J.Biochem., 148, 2010
3AKP
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Crystal structure of xylanase from Trichoderma longibrachiatum
Descriptor: GLYCEROL, xylanase
Authors:Sugahara, M, Kunishima, N.
Deposit date:2010-07-15
Release date:2011-06-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Packing Space Expansion of Protein Crystallization Screening with Synthetic Zeolite as a Heteroepitaxic Nucleant
Cryst.Growth Des., 11, 2011

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