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PDB: 40 results
8UWV
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BU of 8uwv by Molmil
Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21)
Descriptor: BT3984 SusD-like, MAGNESIUM ION
Authors:Sastre, D.E, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-11-08
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21)
To Be Published
8U9F
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BU of 8u9f by Molmil
Crystal structure of Bacteroides thetaiotamicron BT1285 in complex with NaI
Descriptor: 1,2-ETHANEDIOL, Endo-beta-N-acetylglucosaminidase, IODIDE ION, ...
Authors:Sastre, D.E, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-09-19
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8U48
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BU of 8u48 by Molmil
Crystal structure of Bacteroides thetaiotamicron BT1285 D161A-E163A inactive Endoglycosidase in complex with high-mannose N-glycan (Man9GlcNAc2) substrate
Descriptor: Endo-beta-N-acetylglucosaminidase, PHOSPHATE ION, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Sastre, D.E, Sultana, N, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-09-09
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8W01
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BU of 8w01 by Molmil
Crystal structure of DUF1735 domain-containing protein (GH18-like) from Bacteroides faecium at 2.7 A resolution (Space group C2)
Descriptor: DUF1735 domain-containing protein
Authors:Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
Deposit date:2024-02-13
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8W04
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BU of 8w04 by Molmil
Crystal structure of DUF1735-domain containing protein (GH18-like) from Bacteroides faecium at 2.9 A resolution (Space group P21)
Descriptor: DUF1735 domain-containing protein
Authors:Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
Deposit date:2024-02-13
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
3ESF
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BU of 3esf by Molmil
Crystal Structure of the enzyme Fe-superoxide dismutase TbSODB2 from Trypanosoma brucei
Descriptor: FE (III) ION, Iron-containing superoxide dismutase B2
Authors:Bachega, J.F.R, Navarro, M.V.A.S, Garratt, R.C.
Deposit date:2008-10-05
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Systematic structural studies of iron superoxide dismutases from human parasites and a statistical coupling analysis of metal binding specificity
Proteins, 77, 2009
3HAH
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BU of 3hah by Molmil
Crystal structure of human PACSIN1 F-BAR domain (C2 lattice)
Descriptor: CALCIUM ION, human PACSIN1 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HAI
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BU of 3hai by Molmil
Crystal structure of human PACSIN1 F-BAR domain (P21 lattice)
Descriptor: CALCIUM ION, human PACSIN1 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.881 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HAJ
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BU of 3haj by Molmil
Crystal structure of human PACSIN2 F-BAR domain (p212121 lattice)
Descriptor: CALCIUM ION, human PACSIN2 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
3PJV
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BU of 3pjv by Molmil
Structure of Pseudomonas fluorescence LapD periplasmic domain
Descriptor: Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S, Chatterjee, D.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7727 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
3PJT
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BU of 3pjt by Molmil
Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S, Krasteva, P.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5154 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
3PJU
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BU of 3pju by Molmil
Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S, Krasteva, P.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4991 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
3PJX
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BU of 3pjx by Molmil
Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32
Descriptor: 1,2-ETHANEDIOL, Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.0002 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
3PJW
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BU of 3pjw by Molmil
Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23
Descriptor: Cyclic dimeric GMP binding protein
Authors:Sondermann, H, Navarro, M.V.A.S.
Deposit date:2010-11-10
Release date:2011-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1006 Å)
Cite:Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis.
Plos Biol., 9, 2011
2GZB
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BU of 2gzb by Molmil
Bauhinia bauhinioides cruzipain inhibitor (BbCI)
Descriptor: IODIDE ION, Kunitz-type proteinase inhibitor BbCI
Authors:Hansen, D, Macedo-Ribeiro, S, Navarro, M.V.A.S, Garratt, R.C, Oliva, M.L.V.
Deposit date:2006-05-11
Release date:2007-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a novel cysteinless plant Kunitz-type protease inhibitor.
Biochem.Biophys.Res.Commun., 360, 2007
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