6LU1
 
 | | Cyanobacterial PSI Monomer from T. elongatus by Single Particle CRYO-EM at 3.2 A Resolution | | Descriptor: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | | Authors: | Kurisu, G, Coruh, O, Tanaka, H, Gerle, C, Kawamoto, A, Kato, T, Namba, K, Nowaczyk, M.M, Rogner, M, Misumi, Y, Frank, A, Eithar, E.M. | | Deposit date: | 2020-01-24 | | Release date: | 2021-03-17 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
Commun Biol, 4, 2021
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6KN8
 | | Structure of human cardiac thin filament in the calcium bound state | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... | | Authors: | Fujii, T, Yamada, Y, Namba, K. | | Deposit date: | 2019-08-03 | | Release date: | 2020-01-15 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
Nat Commun, 11, 2020
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4A5S
 | | CRYSTAL STRUCTURE OF HUMAN DPP4 IN COMPLEX WITH A NOVAL HETEROCYCLIC DPP4 INHIBITOR | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[(3S)-3-AMINOPIPERIDIN-1-YL]-5-BENZYL-4-OXO-3-(QUINOLIN-4-YLMETHYL)-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDINE-7-CARBONITRILE, DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM, ... | | Authors: | Ostermann, N, Kroemer, M, Zink, F, Gerhartz, B, Sutton, J.M, Clark, D.E, Dunsdon, S.J, Fenton, G, Fillmore, A, Harris, N.V, Higgs, C, Hurley, C.A, Krintel, S.L, MacKenzie, R.E, Duttaroy, A, Gangl, E, Maniara, W, Sedrani, R, Namoto, K, Sirockin, F, Trappe, J, Hassiepen, U, Baeschlin, D.K. | | Deposit date: | 2011-10-28 | | Release date: | 2012-02-08 | | Last modified: | 2020-07-29 | | Method: | X-RAY DIFFRACTION (1.62 Å) | | Cite: | Novel Heterocyclic Dpp-4 Inhibitors for the Treatment of Type 2 Diabetes.
Bioorg.Med.Chem.Lett., 22, 2012
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4A6J
 | | Structural model of ParM filament based on CryoEM map | | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PLASMID SEGREGATION PROTEIN PARM | | Authors: | Gayathri, P, Fujii, T, Moller-Jensen, J, Van Den Ent, F, Namba, K, Lowe, J. | | Deposit date: | 2011-11-04 | | Release date: | 2012-11-21 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (7.2 Å) | | Cite: | A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation.
Science, 338, 2012
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4D3E
 | | Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri | | Descriptor: | INVASIN IPAD | | Authors: | Cheung, M, Shen, D.-K, Makino, F, Kato, T, Roehrich, D, Martinez-Argudo, I, Walker, M.L, Murillo, I, Liu, X, Pain, M, Brown, J, Frazer, G, Mantell, J, Mina, P, Todd, T, Sessions, R.B, Namba, K, Blocker, A.J. | | Deposit date: | 2014-10-21 | | Release date: | 2014-12-10 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (24 Å) | | Cite: | Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex.
Mol.Microbiol., 95, 2015
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1UCU
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2D4V
 | | Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans | | Descriptor: | CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, isocitrate dehydrogenase | | Authors: | Imada, K, Tamura, T, Namba, K, Inagaki, K. | | Deposit date: | 2005-10-24 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
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2D4W
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3VJP
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3VKI
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3TEE
 | | Crystal Structure of Salmonella FlgA in open form | | Descriptor: | CHLORIDE ION, Flagella basal body P-ring formation protein flgA, GLYCEROL | | Authors: | Matsunami, H, Samatey, F.A, Namba, K. | | Deposit date: | 2011-08-12 | | Release date: | 2012-08-15 | | Last modified: | 2016-07-06 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016
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3AJW
 | | Structure of FliJ, a soluble component of flagellar type III export apparatus | | Descriptor: | Flagellar fliJ protein, MERCURY (II) ION | | Authors: | Imada, K, Ibuki, T, Minamino, T, Namba, K. | | Deposit date: | 2010-06-23 | | Release date: | 2011-02-02 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases
Nat.Struct.Mol.Biol., 18, 2011
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1T50
 | | NMR SOLUTION STRUCTURE OF APLYSIA ATTRACTIN | | Descriptor: | Attractin | | Authors: | Ravindranath, G, Xu, Y, Schein, C.H, Rajaratnam, K, Painter, S.D, Nagle, G.T, Braun, W. | | Deposit date: | 2004-04-30 | | Release date: | 2004-05-11 | | Last modified: | 2022-03-02 | | Method: | SOLUTION NMR | | Cite: | NMR Solution Structure of Attractin, a Water-Borne Pheromone from the Mollusk Aplysia Attractin
Biochemistry, 42, 2003
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2D4U
 | | Crystal Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr | | Descriptor: | Methyl-accepting chemotaxis protein I | | Authors: | Imada, K, Tajima, H, Namba, K, Sakuma, M, Homma, M, Kawagishi, I. | | Deposit date: | 2005-10-24 | | Release date: | 2006-11-14 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Ligand specificity determined by differentially arranged common ligand-binding residues in the bacterial amino acid chemoreceptors Tsr and Tar.
J.Biol.Chem., 2011
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3A7M
 | | Structure of FliT, the flagellar type III chaperone for FliD | | Descriptor: | Flagellar protein fliT | | Authors: | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | Deposit date: | 2009-09-29 | | Release date: | 2010-04-28 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJC
 | | Structure of the MC domain of FliG (PEV), a CW-biased mutant | | Descriptor: | Flagellar motor switch protein fliG | | Authors: | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | Deposit date: | 2010-05-27 | | Release date: | 2011-05-11 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
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3RI6
 | | A Novel Mechanism of Sulfur Transfer Catalyzed by O-Acetylhomoserine Sulfhydrylase in Methionine Biosynthetic Pathway of Wolinella succinogenes | | Descriptor: | O-ACETYLHOMOSERINE SULFHYDRYLASE | | Authors: | Tran, T.H, Krishnamoorthy, K, Begley, T.P, Ealick, S.E. | | Deposit date: | 2011-04-13 | | Release date: | 2011-08-17 | | Last modified: | 2023-09-13 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | A novel mechanism of sulfur transfer catalyzed by O-acetylhomoserine sulfhydrylase in the methionine-biosynthetic pathway of Wolinella succinogenes.
Acta Crystallogr.,Sect.D, 67, 2011
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1SDF
 | | SOLUTION STRUCTURE OF STROMAL CELL-DERIVED FACTOR-1 (SDF-1), NMR, MINIMIZED AVERAGE STRUCTURE | | Descriptor: | STROMAL CELL-DERIVED FACTOR-1 | | Authors: | Crump, M.P, Rajarathnam, K, Clark-Lewis, I, Sykes, B.D. | | Deposit date: | 1997-11-15 | | Release date: | 1998-01-28 | | Last modified: | 2022-03-02 | | Method: | SOLUTION NMR | | Cite: | Solution structure and basis for functional activity of stromal cell-derived factor-1; dissociation of CXCR4 activation from binding and inhibition of HIV-1.
EMBO J., 16, 1997
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1IO1
 | | CRYSTAL STRUCTURE OF F41 FRAGMENT OF FLAGELLIN | | Descriptor: | PHASE 1 FLAGELLIN | | Authors: | Samatey, F.A, Imada, K, Nagashima, S, Vondervisz, F, Kumasaka, T, Yamamoto, M, Namba, K. | | Deposit date: | 2000-12-28 | | Release date: | 2001-04-04 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling
Nature, 410, 2001
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2E0Z
 | | Crystal structure of virus-like particle from Pyrococcus furiosus | | Descriptor: | Virus-like particle | | Authors: | Akita, F, Chong, K.T, Tanaka, H, Yamashita, E, Miyazaki, N, Nakaishi, Y, Namba, K, Ono, Y, Suzuki, M, Tsukihara, T, Nakagawa, A. | | Deposit date: | 2006-10-16 | | Release date: | 2007-04-17 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (3.6 Å) | | Cite: | The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
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2EOT
 | | SOLUTION STRUCTURE OF EOTAXIN, AN ENSEMBLE OF 32 NMR SOLUTION STRUCTURES | | Descriptor: | EOTAXIN | | Authors: | Crump, M.P, Rajarathnam, K, Kim, K.-S, Clark-Lewis, I, Sykes, B.D. | | Deposit date: | 1998-06-29 | | Release date: | 1998-11-11 | | Last modified: | 2022-03-09 | | Method: | SOLUTION NMR | | Cite: | Solution structure of eotaxin, a chemokine that selectively recruits eosinophils in allergic inflammation.
J.Biol.Chem., 273, 1998
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3A5X
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1EOT
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3A5I
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1I7O
 | | CRYSTAL STRUCTURE OF HPCE | | Descriptor: | 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL ISOMERASE/DECARBOXYLASE, CALCIUM ION | | Authors: | Tame, J.R.H, Namba, K, Dodson, E.J, Roper, D.I. | | Deposit date: | 2001-03-10 | | Release date: | 2001-03-28 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The crystal structure of HpcE, a multi-functional enzyme fold
To be Published
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