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PDB: 107 件

6KFK
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Structure of Salmonella flagellar hook reveals intermolecular domain interactions for the universal joint function
分子名称: Flagellar hook protein FlgE
著者Horvath, P, Kato, T, Miyata, T, Namba, K.
登録日2019-07-08
公開日2019-10-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structure ofSalmonellaFlagellar Hook Reveals Intermolecular Domain Interactions for the Universal Joint Function.
Biomolecules, 9, 2019
6KN7
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Structure of human cardiac thin filament in the calcium free state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Fujii, T, Yamada, Y, Namba, K.
登録日2019-08-03
公開日2020-01-15
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
Nat Commun, 11, 2020
6KN8
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Structure of human cardiac thin filament in the calcium bound state
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Fujii, T, Yamada, Y, Namba, K.
登録日2019-08-03
公開日2020-01-15
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
Nat Commun, 11, 2020
6LU1
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Cyanobacterial PSI Monomer from T. elongatus by Single Particle CRYO-EM at 3.2 A Resolution
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者Kurisu, G, Coruh, O, Tanaka, H, Gerle, C, Kawamoto, A, Kato, T, Namba, K, Nowaczyk, M.M, Rogner, M, Misumi, Y, Frank, A, Eithar, E.M.
登録日2020-01-24
公開日2021-03-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
Commun Biol, 4, 2021
2D4X
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Crystal structure of a 26K fragment of HAP3 (FlgL)
分子名称: Flagellar hook-associated protein 3
著者Imada, K, Matsunami, H, Samatey, A.F, Nagashima, S, Namba, K.
登録日2005-10-25
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the bacterial flagellar hook-filament junction
To be Published
2DPY
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Crystal structure of the flagellar type III ATPase FliI
分子名称: ADENOSINE-5'-DIPHOSPHATE, Flagellum-specific ATP synthase
著者Imada, K, Namba, K, Minamino, T.
登録日2006-05-18
公開日2006-12-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits
Proc.Natl.Acad.Sci.Usa, 104, 2007
1VGL
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Crystal structure of tetrameric KaiB from T.elongatus BP-1
分子名称: Circadian clock protein kaiB, MERCURY (II) ION
著者Iwase, R, Imada, K, Hayashi, F, Uzumaki, T, Namba, K, Ishiura, M.
登録日2004-04-27
公開日2005-08-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex.
J.Biol.Chem., 280, 2005
2D4Y
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Crystal structure of a 49K fragment of HAP1 (FlgK)
分子名称: Flagellar hook-associated protein 1
著者Imada, K, Matsunami, H, Samatey, A.F, Nagashima, S, Namba, K.
登録日2005-10-25
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the bacterial flagellar hook-filament junction
To be Published
1UCU
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R-type straight flagellar filament made of full-length flagellin
分子名称: phase 1 Flagellin
著者Yonekura, K, Maki-Yonekura, S, Namba, K.
登録日2003-04-22
公開日2003-08-12
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
NATURE, 424, 2003
3A7M
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Structure of FliT, the flagellar type III chaperone for FliD
分子名称: Flagellar protein fliT
著者Imada, K, Minamino, T, Kinoshita, M, Namba, K.
登録日2009-09-29
公開日2010-04-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
3A69
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Atomic model of the bacterial flagellar hook based on docking an X-ray derived structure and terminal two alpha-helices into an 7.1 angstrom resolution cryoEM map
分子名称: Flagellar hook protein flgE
著者Fujii, T, Kato, T, Namba, K.
登録日2009-08-26
公開日2009-12-15
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function
Structure, 17, 2009
4A6J
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Structural model of ParM filament based on CryoEM map
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PLASMID SEGREGATION PROTEIN PARM
著者Gayathri, P, Fujii, T, Moller-Jensen, J, Van Den Ent, F, Namba, K, Lowe, J.
登録日2011-11-04
公開日2012-11-21
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation.
Science, 338, 2012
4A5S
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CRYSTAL STRUCTURE OF HUMAN DPP4 IN COMPLEX WITH A NOVAL HETEROCYCLIC DPP4 INHIBITOR
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[(3S)-3-AMINOPIPERIDIN-1-YL]-5-BENZYL-4-OXO-3-(QUINOLIN-4-YLMETHYL)-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDINE-7-CARBONITRILE, DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM, ...
著者Ostermann, N, Kroemer, M, Zink, F, Gerhartz, B, Sutton, J.M, Clark, D.E, Dunsdon, S.J, Fenton, G, Fillmore, A, Harris, N.V, Higgs, C, Hurley, C.A, Krintel, S.L, MacKenzie, R.E, Duttaroy, A, Gangl, E, Maniara, W, Sedrani, R, Namoto, K, Sirockin, F, Trappe, J, Hassiepen, U, Baeschlin, D.K.
登録日2011-10-28
公開日2012-02-08
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Novel Heterocyclic Dpp-4 Inhibitors for the Treatment of Type 2 Diabetes.
Bioorg.Med.Chem.Lett., 22, 2012
3A5X
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L-type straight flagellar filament made of full-length flagellin
分子名称: Flagellin
著者Maki-Yonekura, S, Yonekura, K, Namba, K.
登録日2009-08-13
公開日2010-03-16
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Conformational change of flagellin for polymorphic supercoiling of the flagellar filament
Nat.Struct.Mol.Biol., 17, 2010
4D3E
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Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri
分子名称: INVASIN IPAD
著者Cheung, M, Shen, D.-K, Makino, F, Kato, T, Roehrich, D, Martinez-Argudo, I, Walker, M.L, Murillo, I, Liu, X, Pain, M, Brown, J, Frazer, G, Mantell, J, Mina, P, Todd, T, Sessions, R.B, Namba, K, Blocker, A.J.
登録日2014-10-21
公開日2014-12-10
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (24 Å)
主引用文献Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex.
Mol.Microbiol., 95, 2015
2D4V
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Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans
分子名称: CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, isocitrate dehydrogenase
著者Imada, K, Tamura, T, Namba, K, Inagaki, K.
登録日2005-10-24
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
2D4W
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Crystal structure of glycerol kinase from Cellulomonas sp. NT3060
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, glycerol kinase
著者Imada, K, Tamura, T, Namba, K, Inagaki, K.
登録日2005-10-24
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of glycerol kinase from Cellulomonas sp. NT3060
To be Published
3A5I
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Structure of the cytoplasmic domain of FlhA
分子名称: Flagellar biosynthesis protein flhA
著者Imada, K, Saijo-Hamano, Y, Shimada, M, Namba, K.
登録日2009-08-07
公開日2010-03-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export
Mol.Microbiol., 76, 2010
1T50
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NMR SOLUTION STRUCTURE OF APLYSIA ATTRACTIN
分子名称: Attractin
著者Ravindranath, G, Xu, Y, Schein, C.H, Rajaratnam, K, Painter, S.D, Nagle, G.T, Braun, W.
登録日2004-04-30
公開日2004-05-11
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献NMR Solution Structure of Attractin, a Water-Borne Pheromone from the Mollusk Aplysia Attractin
Biochemistry, 42, 2003
2ZVY
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Structure of the periplasmic domain of MotB from Salmonella (crystal form II)
分子名称: Chemotaxis protein motB
著者Kojima, S, Homma, M, Namba, K, Imada, K.
登録日2008-11-26
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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Structure of the periplasmic domain of MotB from Salmonella (crystal form III)
分子名称: Chemotaxis protein motB
著者Imada, K, Kojima, S, Namba, K, Homma, S.
登録日2008-11-26
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZF8
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Crystal structure of MotY
分子名称: Component of sodium-driven polar flagellar motor
著者Imada, K, Kojima, S, Namba, K, Homma, M.
登録日2007-12-25
公開日2008-07-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
1SDF
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BU of 1sdf by Molmil
SOLUTION STRUCTURE OF STROMAL CELL-DERIVED FACTOR-1 (SDF-1), NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: STROMAL CELL-DERIVED FACTOR-1
著者Crump, M.P, Rajarathnam, K, Clark-Lewis, I, Sykes, B.D.
登録日1997-11-15
公開日1998-01-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure and basis for functional activity of stromal cell-derived factor-1; dissociation of CXCR4 activation from binding and inhibition of HIV-1.
EMBO J., 16, 1997
2ZOV
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Structure of the periplasmic domain of MotB from Salmonella (crystal form I)
分子名称: Chemotaxis protein motB
著者Imada, K, Kojima, S, Namba, K, Homma, M.
登録日2008-06-09
公開日2009-06-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
1EOT
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SOLUTION NMR STRUCTURE OF EOTAXIN, MINIMIZED AVERAGE STRUCTURE
分子名称: EOTAXIN
著者Crump, M.P, Rajarathnam, K, Sykes, B.D.
登録日1998-06-17
公開日1999-01-13
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Solution structure of eotaxin, a chemokine that selectively recruits eosinophils in allergic inflammation.
J.Biol.Chem., 273, 1998

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