1A05
 
 | | CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE | | 分子名称: | 3-ISOPROPYLMALATE DEHYDROGENASE, 3-ISOPROPYLMALIC ACID, MAGNESIUM ION | | 著者 | Imada, K, Inagaki, K, Matsunami, H, Kawaguchi, H, Tanaka, H, Tanaka, N, Namba, K. | | 登録日 | 1997-12-09 | | 公開日 | 1998-06-17 | | 最終更新日 | 2024-05-22 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.
Structure, 6, 1998
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7W2J
 | | Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus | | 分子名称: | FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... | | 著者 | Suzuki, Y, Makino, F, Miyata, T, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. | | 登録日 | 2021-11-24 | | 公開日 | 2022-11-30 | | 最終更新日 | 2023-12-13 | | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | | 主引用文献 | Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry
Acs Catalysis, 13, 2023
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7WSQ
 | | Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus | | 分子名称: | FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... | | 著者 | Suzuki, Y, Makino, F, Miyata, T, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. | | 登録日 | 2022-02-01 | | 公開日 | 2023-02-08 | | 最終更新日 | 2023-12-13 | | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | | 主引用文献 | Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry
Acs Catalysis, 13, 2023
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2MGS
 | | Solution structure of CXCL5 | | 分子名称: | C-X-C motif chemokine 5 | | 著者 | Sepuru, K, Rajarathnam, K. | | 登録日 | 2013-11-04 | | 公開日 | 2014-04-02 | | 最終更新日 | 2016-04-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution Structure of CXCL5 - A Novel Chemokine and Adipokine Implicated in Inflammation and Obesity.
Plos One, 9, 2014
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2SDF
 | | SOLUTION NMR STRUCTURE OF STROMAL CELL-DERIVED FACTOR-1 (SDF-1), 30 STRUCTURES | | 分子名称: | STROMAL CELL-DERIVED FACTOR-1 | | 著者 | Crump, M.P, Rajarathnam, K, Clark-Lewis, I, Sykes, B.D. | | 登録日 | 1998-03-07 | | 公開日 | 1998-06-17 | | 最終更新日 | 2022-03-16 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure and basis for functional activity of stromal cell-derived factor-1; dissociation of CXCR4 activation from binding and inhibition of HIV-1.
EMBO J., 16, 1997
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2BGY
 | | Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus. | | 分子名称: | FLAGELLAR HOOK PROTEIN FLGE | | 著者 | Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, DeRosier, D.J. | | 登録日 | 2005-01-06 | | 公開日 | 2005-01-27 | | 最終更新日 | 2024-05-08 | | 実験手法 | ELECTRON MICROSCOPY (9 Å) | | 主引用文献 | A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
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2BGZ
 | | ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP. | | 分子名称: | FLAGELLAR HOOK PROTEIN FLGE | | 著者 | Shaikh, T.R, Thomas, D.R, Chen, J.Z, Samatey, F.A, Matsunami, H, Imada, K, Namba, K, Derosier, D.J. | | 登録日 | 2005-01-06 | | 公開日 | 2005-01-27 | | 最終更新日 | 2024-05-08 | | 実験手法 | ELECTRON MICROSCOPY (9 Å) | | 主引用文献 | A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
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3TEE
 | | Crystal Structure of Salmonella FlgA in open form | | 分子名称: | CHLORIDE ION, Flagella basal body P-ring formation protein flgA, GLYCEROL | | 著者 | Matsunami, H, Samatey, F.A, Namba, K. | | 登録日 | 2011-08-12 | | 公開日 | 2012-08-15 | | 最終更新日 | 2016-07-06 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016
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3VKI
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2D4Y
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2D4X
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5XL0
 | | met-aquo form of sperm whale myoglobin reconstituted with 7-PF, a heme possesseing CF3 group as side chain | | 分子名称: | Myoglobin, SULFATE ION, fluorinated heme | | 著者 | Kanai, Y, Harada, A, Shibata, T, Nishimura, R, Namiki, K, Watanabe, M, Nakamura, S, Yumoto, F, Senda, T, Suzuki, A, Neya, S, Yamamoto, Y. | | 登録日 | 2017-05-10 | | 公開日 | 2017-08-16 | | 最終更新日 | 2024-03-27 | | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | | 主引用文献 | Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor
Biochemistry, 56, 2017
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2DPY
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3MFP
 | | Atomic model of F-actin based on a 6.6 angstrom resolution cryoEM map | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle | | 著者 | Fujii, T, Iwane, A.H, Yanagida, T, Namba, K. | | 登録日 | 2010-04-03 | | 公開日 | 2010-09-29 | | 最終更新日 | 2019-12-18 | | 実験手法 | ELECTRON MICROSCOPY (6.6 Å) | | 主引用文献 | Direct visualization of secondary structures of F-actin by electron cryomicroscopy
Nature, 467, 2010
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7WT6
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6KFK
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4D3E
 | | Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri | | 分子名称: | INVASIN IPAD | | 著者 | Cheung, M, Shen, D.-K, Makino, F, Kato, T, Roehrich, D, Martinez-Argudo, I, Walker, M.L, Murillo, I, Liu, X, Pain, M, Brown, J, Frazer, G, Mantell, J, Mina, P, Todd, T, Sessions, R.B, Namba, K, Blocker, A.J. | | 登録日 | 2014-10-21 | | 公開日 | 2014-12-10 | | 最終更新日 | 2024-05-08 | | 実験手法 | ELECTRON MICROSCOPY (24 Å) | | 主引用文献 | Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex.
Mol.Microbiol., 95, 2015
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3AJW
 | | Structure of FliJ, a soluble component of flagellar type III export apparatus | | 分子名称: | Flagellar fliJ protein, MERCURY (II) ION | | 著者 | Imada, K, Ibuki, T, Minamino, T, Namba, K. | | 登録日 | 2010-06-23 | | 公開日 | 2011-02-02 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases
Nat.Struct.Mol.Biol., 18, 2011
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2M1W
 | | TICAM-2 TIR domain | | 分子名称: | TIR domain-containing adapter molecule 2 | | 著者 | Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F. | | 登録日 | 2012-12-07 | | 公開日 | 2014-01-15 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
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2M1X
 | | TICAM-1 TIR domain structure | | 分子名称: | TIR domain-containing adapter molecule 1 | | 著者 | Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F. | | 登録日 | 2012-12-07 | | 公開日 | 2014-01-15 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
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3A7M
 | | Structure of FliT, the flagellar type III chaperone for FliD | | 分子名称: | Flagellar protein fliT | | 著者 | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | 登録日 | 2009-09-29 | | 公開日 | 2010-04-28 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
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3AJC
 | | Structure of the MC domain of FliG (PEV), a CW-biased mutant | | 分子名称: | Flagellar motor switch protein fliG | | 著者 | Imada, K, Minamino, T, Kinoshita, M, Namba, K. | | 登録日 | 2010-05-27 | | 公開日 | 2011-05-11 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
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2D4V
 | | Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans | | 分子名称: | CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, isocitrate dehydrogenase | | 著者 | Imada, K, Tamura, T, Namba, K, Inagaki, K. | | 登録日 | 2005-10-24 | | 公開日 | 2006-11-14 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
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2D4W
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3RI6
 | | A Novel Mechanism of Sulfur Transfer Catalyzed by O-Acetylhomoserine Sulfhydrylase in Methionine Biosynthetic Pathway of Wolinella succinogenes | | 分子名称: | O-ACETYLHOMOSERINE SULFHYDRYLASE | | 著者 | Tran, T.H, Krishnamoorthy, K, Begley, T.P, Ealick, S.E. | | 登録日 | 2011-04-13 | | 公開日 | 2011-08-17 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | A novel mechanism of sulfur transfer catalyzed by O-acetylhomoserine sulfhydrylase in the methionine-biosynthetic pathway of Wolinella succinogenes.
Acta Crystallogr.,Sect.D, 67, 2011
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