2ZBR
| Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus in complex with S-adenosyl-ornithine | 分子名称: | Ribosomal protein L11 methyltransferase, SINEFUNGIN | 著者 | Kaminishi, T, Sakai, H, Takemoto-Hori, C, Terada, T, Nakagawa, N, Maoka, N, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-10-26 | 公開日 | 2008-11-11 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of ribosomal protein L11 methyltransferase from Thermus thermophilus To be Published
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2YVP
| Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 | 分子名称: | MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-13 | 公開日 | 2008-02-26 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
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2YVN
| Crystal structure of NDX2 from thermus thermophilus HB8 | 分子名称: | MutT/nudix family protein | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-13 | 公開日 | 2008-02-26 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.84 Å) | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
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2YVM
| Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8 | 分子名称: | MAGNESIUM ION, MutT/nudix family protein | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-13 | 公開日 | 2008-02-26 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
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2ZW2
| Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS) | 分子名称: | GLYCEROL, Putative uncharacterized protein STS178 | 著者 | Suzuki, S, Tamura, S, Okada, K, Baba, S, Kumasaka, T, Nakagawa, N, Masui, R, Kuramitsu, S, Sampei, G, Kawai, G. | 登録日 | 2008-11-27 | 公開日 | 2009-11-17 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS) To be Published
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2ZZI
| Crystal structure of TTHA1623 in a di-iron-bound form | 分子名称: | ACETATE ION, FE (III) ION, Metallo-beta-lactamase superfamily protein | 著者 | Yamamura, A, Okada, A, Kameda, Y, Ohtsuka, J, Nakagawa, N, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M. | 登録日 | 2009-02-16 | 公開日 | 2010-01-05 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 65, 2009
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2ZXP
| Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8 | 分子名称: | MANGANESE (II) ION, Single-stranded DNA specific exonuclease RecJ | 著者 | Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2009-01-05 | 公開日 | 2010-01-05 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
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3A0J
| Crystal structure of cold shock protein 1 from Thermus thermophilus HB8 | 分子名称: | Cold shock protein | 著者 | Miyazaki, T, Nakagawa, N, Kuramitsu, S, Masui, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-03-19 | 公開日 | 2010-03-23 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | The Biological Action of Cold Shock Protein 1 from Thermus thermophilus HB8 To be Published
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3ADR
| The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii | 分子名称: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Putative uncharacterized protein ST1585, ... | 著者 | Shimada, A, Ishikawa, H, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-01-28 | 公開日 | 2010-04-21 | 最終更新日 | 2017-10-11 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii Proteins, 78, 2010
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3AAL
| Crystal Structure of endonuclease IV from Geobacillus kaustophilus | 分子名称: | CACODYLATE ION, FE (III) ION, Probable endonuclease 4, ... | 著者 | Asano, R, Ishikawa, H, Nakane, S, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-11-20 | 公開日 | 2010-12-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Acta Crystallogr.,Sect.D, 67, 2011
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2ZQE
| Crystal structure of the Smr domain of Thermus thermophilus MutS2 | 分子名称: | MutS2 protein | 著者 | Fukui, K, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2008-08-08 | 公開日 | 2008-09-30 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression J.Biol.Chem., 283, 2008
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2ZIG
| Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8 | 分子名称: | Putative modification methylase | 著者 | Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-02-15 | 公開日 | 2008-07-29 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
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3AKC
| Crystal structure of CMP kinase in complex with CDP and ADP from Thermus thermophilus HB8 | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, Cytidylate kinase, ... | 著者 | Mega, R, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-07-12 | 公開日 | 2011-07-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | The crystal structure of the tertiary complex of CMP kinase with a phosphoryl group acceptor and a donor from Thermus thermophilus HB8 To be Published
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3AF5
| The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii | 分子名称: | ACETIC ACID, Putative uncharacterized protein PH1404, SULFATE ION, ... | 著者 | Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2010-02-23 | 公開日 | 2010-04-21 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Proteins, 78, 2010
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3AF6
| The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog | 分子名称: | 5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3', Putative uncharacterized protein PH1404, SULFATE ION, ... | 著者 | Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S. | 登録日 | 2010-02-24 | 公開日 | 2010-04-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Proteins, 78, 2010
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3AKD
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3AV3
| Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus kaustophilus | 分子名称: | MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase | 著者 | Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-02-18 | 公開日 | 2012-03-07 | 最終更新日 | 2014-01-15 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structures and reaction mechanisms of the two related enzymes, PurN and PurU. J.Biochem., 154, 2013
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3ASZ
| CMP-complex structure of uridine kinase from Thermus thermophilus HB8 | 分子名称: | CYTIDINE-5'-MONOPHOSPHATE, Uridine kinase | 著者 | Tomoike, F, Nakagawa, N, Kuramitsu, S, Masui, R. | 登録日 | 2010-12-22 | 公開日 | 2011-06-01 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | A Single Amino Acid Limits the Substrate Specificity of Thermus thermophilus Uridine-Cytidine Kinase to Cytidine Biochemistry, 50, 2011
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3AU2
| DNA polymerase X from Thermus thermophilus HB8 complexed with Ca-dGTP | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... | 著者 | Nakane, S, Ishikawa, H, Wakamatsu, T, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-01-28 | 公開日 | 2012-01-25 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012
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3AUO
| DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP | 分子名称: | 1-nt gapped DNA, 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase beta family (X family), ... | 著者 | Nakane, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-02-11 | 公開日 | 2012-01-25 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012
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3AW8
| Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermus thermophilus HB8 | 分子名称: | ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Phosphoribosylaminoimidazole carboxylase, ... | 著者 | Okada, K, Tsunoda, S, Taka, H, Baba, S, Kanagawa, M, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-03-15 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria To be Published
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3ASY
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2YVO
| Crystal structure of NDX2 in complex with MG2+ and AMP from thermus thermophilus HB8 | 分子名称: | ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, MutT/nudix family protein | 著者 | Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-04-13 | 公開日 | 2008-02-26 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.67 Å) | 主引用文献 | Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 J.Bacteriol., 190, 2008
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2ZIE
| Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative | 分子名称: | Putative modification methylase | 著者 | Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2008-02-15 | 公開日 | 2008-07-29 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
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3B0X
| K263A mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... | 著者 | Nakane, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2011-06-17 | 公開日 | 2012-05-02 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.36 Å) | 主引用文献 | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012
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