1WM1
 
 | | Crystal Structure of Prolyl Aminopeptidase, Complex with Pro-TBODA | | 分子名称: | (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE, Proline iminopeptidase | | 著者 | Nakajima, Y, Inoue, T, Ito, K, Tozaka, T, Hatakeyama, S, Tanaka, N, Nakamura, K.T, Yoshimoto, T. | | 登録日 | 2004-07-01 | | 公開日 | 2004-07-20 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor
ARCH.BIOCHEM.BIOPHYS., 416, 2003
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1WG0
 | | Structural comparison of Nas6p protein structures in two different crystal forms | | 分子名称: | Probable 26S proteasome regulatory subunit p28 | | 著者 | Nakamura, Y, Umehara, T, Tanaka, A, Horikoshi, M, Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-05-27 | | 公開日 | 2005-06-07 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.53 Å) | | 主引用文献 | Structural comparison of Nas6p protein structures in two different crystal forms
To be Published
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1WUQ
 | | Structure of GTP cyclohydrolase I Complexed with 8-oxo-GTP | | 分子名称: | 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | | 著者 | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-12-08 | | 公開日 | 2005-07-19 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
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1WUR
 | | Structure of GTP cyclohydrolase I Complexed with 8-oxo-dGTP | | 分子名称: | 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | | 著者 | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-12-08 | | 公開日 | 2005-07-19 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.82 Å) | | 主引用文献 | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
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2D61
 | | Aspartate Aminotransferase Mutant MA With Maleic Acid | | 分子名称: | Aspartate aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-08 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D63
 | | Aspartate Aminotransferase Mutant MA With Isovaleric Acid | | 分子名称: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-09 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D5Y
 | | Aspartate Aminotransferase Mutant MC With Isovaleric Acid | | 分子名称: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-08 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D7Y
 | | Aspartate Aminotransferase Mutant MA | | 分子名称: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-30 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.66 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D66
 | | Aspartate Aminotransferase Mutant MAB | | 分子名称: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-09 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.18 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D7Z
 | | Aspartate Aminotransferase Mutant MAB Complexed with Maleic Acid | | 分子名称: | Aspartate aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-30 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D65
 | | Aspartate Aminotransferase Mutant MABC | | 分子名称: | Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-09 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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2D64
 | | Aspartate Aminotransferase Mutant MABC With Isovaleric Acid | | 分子名称: | Aspartate aminotransferase, ISOVALERIC ACID, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Tanaka, Y, Nakagawa, N, Tada, H, Yano, T, Masui, R, Kuramitsu, S. | | 登録日 | 2005-11-09 | | 公開日 | 2006-11-14 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
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3WUC
 | | X-ray crystal structure of Xenopus laevis galectin-Va | | 分子名称: | Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | | 著者 | Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T. | | 登録日 | 2014-04-23 | | 公開日 | 2015-04-08 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
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3WUD
 | | X-ray crystal structure of Xenopus laevis galectin-Ib | | 分子名称: | Galectin, SULFATE ION, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | | 著者 | Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T. | | 登録日 | 2014-04-23 | | 公開日 | 2015-04-08 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.68 Å) | | 主引用文献 | Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
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2Z2E
 | | Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation | | 分子名称: | Lysozyme C, milk isozyme, SULFATE ION | | 著者 | Nonaka, Y, Akieda, D, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K. | | 登録日 | 2007-05-21 | | 公開日 | 2007-11-27 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | | 主引用文献 | Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
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3WKR
 | | Crystal structure of the SepCysS-SepCysE complex from Methanocaldococcus jannaschii | | 分子名称: | O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481 | | 著者 | Nakazawa, Y, Asano, N, Nakamura, A, Yao, M. | | 登録日 | 2013-10-30 | | 公開日 | 2014-07-16 | | 最終更新日 | 2022-08-24 | | 実験手法 | X-RAY DIFFRACTION (2.803 Å) | | 主引用文献 | Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.
Proc.Natl.Acad.Sci.USA, 111, 2014
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3WKS
 | | Crystal structure of the SepCysS-SepCysE N-terminal domain complex from | | 分子名称: | O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481 | | 著者 | Nakazawa, Y, Asano, N, Nakamura, A, Yao, M. | | 登録日 | 2013-10-30 | | 公開日 | 2014-07-30 | | 最終更新日 | 2022-08-24 | | 実験手法 | X-RAY DIFFRACTION (3.029 Å) | | 主引用文献 | Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.
Proc.Natl.Acad.Sci.USA, 111, 2014
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1J08
 | | Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii | | 分子名称: | glutaredoxin-like protein | | 著者 | Tanaka, Y, Tanabe, E, Tsumoto, K, Kumagai, I, Yao, M, Tanaka, I. | | 登録日 | 2002-11-11 | | 公開日 | 2003-05-11 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
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1WU7
 | | Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum | | 分子名称: | Histidyl-tRNA synthetase | | 著者 | Tanaka, Y, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I. | | 登録日 | 2004-12-01 | | 公開日 | 2005-12-06 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
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6M5Y
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1HLV
 | | CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA | | 分子名称: | CENP-B BOX DNA, MAJOR CENTROMERE AUTOANTIGEN B | | 著者 | Tanaka, Y, Nureki, O, Kurumizaka, H, Fukai, S, Kawaguchi, S, Ikuta, M, Iwahara, J, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2000-12-04 | | 公開日 | 2002-01-11 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.
EMBO J., 20, 2001
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6KR0
 | | Crystal structure of HL homo-diabody | | 分子名称: | HL diabody | | 著者 | Tanaka, Y. | | 登録日 | 2019-08-20 | | 公開日 | 2020-08-26 | | 最終更新日 | 2021-09-08 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Association behavior and control of the quality of cancer therapeutic bispecific diabodies expressed in Escherichia coli
Biochem Eng J, 160, 2020
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5YHF
 | | Crystal structure of SecDF in Super-membrane-facing form | | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecDF | | 著者 | Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Furukawa, A. | | 登録日 | 2017-09-28 | | 公開日 | 2018-02-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Remote Coupled Drastic beta-Barrel to beta-Sheet Transition of the Protein Translocation Motor.
Structure, 26, 2018
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5YCK
 | | Crystal structure of a MATE family protein derived from Camelina sativa at 2.3 angstrom | | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, RUBIDIUM ION, multi drug efflux transporter | | 著者 | Tanaka, Y, Tsukazaki, T, Iwaki, S. | | 登録日 | 2017-09-07 | | 公開日 | 2017-09-27 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein
Structure, 25, 2017
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1WV3
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