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PDB: 429 件
1TEI
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BU of 1tei by Molmil
STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D-MAN-(1,6)[BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)]ALPHA-D-MAN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, CALCIUM ION, CONCANAVALIN A, ...
著者Naismith, J.H, Moothoo, D.N.
登録日1997-05-28
公開日1997-08-20
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Concanavalin A distorts the beta-GlcNAc-(1-->2)-Man linkage of beta-GlcNAc-(1-->2)-alpha-Man-(1-->3)-[beta-GlcNAc-(1-->2)-alpha-Man- (1-->6)]-Man upon binding.
Glycobiology, 8, 1998
7OAQ
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BU of 7oaq by Molmil
Nanobody H3 AND C1 bound to RBD with Kent mutation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, CITRIC ACID, ...
著者Naismith, J.H, Mikolajek, H.
登録日2021-04-20
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7OAO
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BU of 7oao by Molmil
Nanobody C5 bound to RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, C5 nanobody, ...
著者Naismith, J.H, Mikolajek, H.
登録日2021-04-19
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7OAP
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BU of 7oap by Molmil
Nanobody H3 AND C1 bound to RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, C1 nanobody, CHLORIDE ION, ...
著者Naismith, J.H, Mikolajek, H.
登録日2021-04-19
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7OAN
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BU of 7oan by Molmil
Nanobody C5 bound to Spike
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Naismith, J.H, Weckener, M.
登録日2021-04-19
公開日2021-08-11
最終更新日2021-10-06
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7OAY
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BU of 7oay by Molmil
Nanobody F2 bound to RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, F2 nanobody, Spike protein S1
著者Naismith, J.H, Mikolajek, H.
登録日2021-04-20
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7OAU
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BU of 7oau by Molmil
Nanobody C5 bound to Kent variant RBD (N501Y)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, C5, GLYCEROL, ...
著者Naismith, J.H, Mikolajek, H.
登録日2021-04-20
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A potent SARS-CoV-2 neutralising nanobody shows therapeutic efficacy in the Syrian golden hamster model of COVID-19.
Nat Commun, 12, 2021
7QUR
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BU of 7qur by Molmil
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
分子名称: 2,3,5-tris(iodanyl)benzamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Naismith, J.H, Yang, Y, Liu, J.W.
登録日2022-01-18
公開日2022-06-01
最終更新日2022-08-03
実験手法ELECTRON MICROSCOPY (2.27 Å)
主引用文献Pathogen-sugar interactions revealed by universal saturation transfer analysis.
Science, 377, 2022
7QUS
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BU of 7qus by Molmil
SARS-CoV-2 Spike, C3 symmetry
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LINOLEIC ACID, ...
著者Naismith, J.H, Yang, Y, Liu, J.W.
登録日2022-01-18
公開日2022-06-08
最終更新日2022-08-03
実験手法ELECTRON MICROSCOPY (2.39 Å)
主引用文献Pathogen-sugar interactions revealed by universal saturation transfer analysis.
Science, 377, 2022
5CNA
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BU of 5cna by Molmil
REFINED STRUCTURE OF CONCANAVALIN A COMPLEXED WITH ALPHA-METHYL-D-MANNOPYRANOSIDE AT 2.0 ANGSTROMS RESOLUTION AND COMPARISON WITH THE SACCHARIDE-FREE STRUCTURE
分子名称: CALCIUM ION, CHLORIDE ION, CONCANAVALIN A, ...
著者Naismith, J.H, Emmerich, C, Habash, J, Harrop, S.J, Helliwell, J.R, Hunter, W.N, Raftery, J, Kalb(Gilboa), A.J, Yariv, J.
登録日1994-02-11
公開日1994-05-31
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Refined structure of concanavalin A complexed with methyl alpha-D-mannopyranoside at 2.0 A resolution and comparison with the saccharide-free structure.
Acta Crystallogr.,Sect.D, 50, 1994
2VG1
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BU of 2vg1 by Molmil
Rv1086 E,E-farnesyl diphosphate complex
分子名称: FARNESYL DIPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
著者Naismith, J.H, Wang, W, Dong, C.
登録日2007-11-07
公開日2007-11-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The structural basis of chain length control in Rv1086.
J. Mol. Biol., 381, 2008
2VFW
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BU of 2vfw by Molmil
Rv1086 native
分子名称: SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE, SULFATE ION
著者Naismith, J.H, Wang, W, Dong, C.
登録日2007-11-05
公開日2007-11-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The structural basis of chain length control in Rv1086.
J. Mol. Biol., 381, 2008
5H8C
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BU of 5h8c by Molmil
Truncated XPD
分子名称: IRON/SULFUR CLUSTER, XPD/Rad3 related DNA helicase
著者Naismith, J.H, Constantinescu, D.
登録日2015-12-23
公開日2016-01-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Mechanism of DNA loading by the DNA repair helicase XPD.
Nucleic Acids Res., 44, 2016
5H8W
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BU of 5h8w by Molmil
XPD mechanism
分子名称: ATP-dependent DNA helicase Ta0057, DNA (5'-D(P*TP*AP*CP*GP*A)-3'), IRON/SULFUR CLUSTER, ...
著者Naismith, J.H, Constantinescu, D.
登録日2015-12-24
公開日2016-01-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanism of DNA loading by the DNA repair helicase XPD.
Nucleic Acids Res., 44, 2016
6YQQ
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BU of 6yqq by Molmil
ForT-PRPP complex
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, ForT-PRPP complex, ...
著者Naismith, J.H, Gao, S.
登録日2020-04-18
公開日2020-05-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.
Chem.Commun.(Camb.), 56, 2020
6Y47
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BU of 6y47 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L5
分子名称: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
著者Naismith, J.H, Moynie, L.M.
登録日2020-02-19
公開日2021-01-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
5AJI
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BU of 5aji by Molmil
MscS D67R1 high resolution
分子名称: DECANE, HEXANE, N-OCTANE, ...
著者Naismith, J.H, Pliotas, C.
登録日2015-02-24
公開日2015-07-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献The Role of Lipids in Mechanosensation.
Nat.Struct.Mol.Biol., 22, 2015
7NIH
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BU of 7nih by Molmil
Wzc-K540M MgADP C8
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative transmembrane protein Wzc
著者Naismith, J.H, Liu, J.W, Yang, Y.
登録日2021-02-12
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
7NII
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BU of 7nii by Molmil
Wzc-K540M MgADP C1
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative transmembrane protein Wzc
著者Naismith, J.H, Liu, J.W, Yang, Y.
登録日2021-02-12
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
1CVN
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BU of 1cvn by Molmil
CONCANAVALIN A COMPLEXED TO TRIMANNOSIDE
分子名称: CALCIUM ION, CONCANAVALIN A, MANGANESE (II) ION, ...
著者Naismith, J.H.
登録日1995-08-09
公開日1996-10-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of trimannoside recognition by concanavalin A.
J.Biol.Chem., 271, 1996
7NHS
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BU of 7nhs by Molmil
Wzc K540M C8
分子名称: Putative transmembrane protein Wzc
著者Naismith, J.H, Liu, J.W, Yang, Y.
登録日2021-02-11
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
7NI2
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BU of 7ni2 by Molmil
Wzc-K540M-4YE C8
分子名称: Tyrosine-protein kinase
著者Naismith, J.H, Liu, J.W, Yang, Y.
登録日2021-02-11
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
7NIB
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Wzc-K540M-4YE C1
分子名称: Tyrosine-protein kinase
著者Naismith, J.H, Liu, J.W, Yang, Y.
登録日2021-02-11
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.51 Å)
主引用文献The molecular basis of regulation of bacterial capsule assembly by Wzc.
Nat Commun, 12, 2021
1EXT
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BU of 1ext by Molmil
EXTRACELLULAR DOMAIN OF THE 55KDA TUMOR NECROSIS FACTOR RECEPTOR. CRYSTALLIZED AT PH3.7 IN P 21 21 21.
分子名称: MAGNESIUM ION, SULFATE ION, TUMOR NECROSIS FACTOR RECEPTOR
著者Naismith, J.H, Sprang, S.R.
登録日1996-07-03
公開日1997-01-11
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structures of the extracellular domain of the type I tumor necrosis factor receptor.
Structure, 4, 1996
6SSF
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BU of 6ssf by Molmil
Transaminase with LCS bound
分子名称: ForI-LCS, SULFATE ION, [4-[(~{Z})-[(2~{S},5~{S})-5-(azanyloxymethyl)-3,6-bis(oxidanylidene)piperazin-2-yl]methoxyiminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate
著者Naismith, J.H, Gao, S.
登録日2019-09-06
公開日2020-01-15
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献PMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis.
Chem.Commun.(Camb.), 55, 2019

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