8JH8
| Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Feruloyl esterase, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-05-22 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structure-Based Characterization and Improvement of an Enzymatic Activity of Acremonium alcalophilum Feruloyl Esterase Acs Sustain Chem Eng, 12, 2024
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8JH9
| Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, Feruloyl esterase with ferulic acid, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-05-22 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure-Based Characterization and Improvement of an Enzymatic Activity of Acremonium alcalophilum Feruloyl Esterase Acs Sustain Chem Eng, 12, 2024
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8IYB
| Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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8IYC
| Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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8IY8
| Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Feruloyl esterase | Authors: | Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M. | Deposit date: | 2023-04-04 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii. Int.J.Biol.Macromol., 253, 2023
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5X3Z
| Solution structure of musashi1 RBD2 in complex with RNA | Descriptor: | RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 | Authors: | Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. | Deposit date: | 2017-02-09 | Release date: | 2017-12-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
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5X3Y
| Refined solution structure of musashi1 RBD2 | Descriptor: | RNA-binding protein Musashi homolog 1 | Authors: | Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. | Deposit date: | 2017-02-09 | Release date: | 2017-12-13 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
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1IQT
| Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1) | Descriptor: | heterogeneous nuclear ribonucleoprotein D0 | Authors: | Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S. | Deposit date: | 2001-08-01 | Release date: | 2002-08-07 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA. J.Mol.Biol., 311, 2001
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2RS2
| 1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex | Descriptor: | RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 | Authors: | Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M. | Deposit date: | 2011-06-27 | Release date: | 2011-12-28 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions Nucleic Acids Res., 2011
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2RU7
| Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein | Descriptor: | P16 peptide from Major prion protein, RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') | Authors: | Hayashi, T, Oshima, H, Mashima, T, Nagata, T, Katahira, M, Kinoshita, M. | Deposit date: | 2013-12-24 | Release date: | 2014-05-21 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition. Nucleic Acids Res., 42, 2014
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2RUG
| Refined solution structure of the first RNA recognition motif domain in CPEB3 | Descriptor: | Cytoplasmic polyadenylation element-binding protein 3 | Authors: | Tsuda, K, Kuwasako, K, Nagata, T, Takahashi, M, Kigawa, T, Kobayashi, N, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2014-04-15 | Release date: | 2014-09-17 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3. Proteins, 82, 2014
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1WEL
| Solution structure of RNA binding domain in NP_006038 | Descriptor: | RNA-binding protein 12 | Authors: | Someya, T, Muto, Y, Nagata, T, Suzuki, S, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-25 | Release date: | 2005-08-23 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in NP_006038 To be Published
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1WG1
| Solution structure of RNA binding domain in BAB13405(homolog EXC-7) | Descriptor: | KIAA1579 protein | Authors: | Tsuda, K, Muto, Y, Nagata, T, Suzuki, S, Someya, T, Kigawa, T, Terada, T, Shirouzu, M, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-27 | Release date: | 2004-11-27 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in BAB13405(homolog EXC-7) To be Published
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1WI8
| Solution structure of the RNA binding domain of eukaryotic initiation factor 4B | Descriptor: | Eukaryotic translation initiation factor 4B | Authors: | Suzuki, S, Muto, Y, Nagata, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2004-11-28 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the RNA binding domain of eukaryotic initiation factor 4B To be Published
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1WI6
| Solution structure of the RNA binding domain from mouse hypothetical protein BAB23670 | Descriptor: | Hypothetical protein (RIKEN cDNA 1300006N24) | Authors: | Suzuki, S, Muto, Y, Nagata, T, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the RNA binding domain from mouse hypothetical protein BAB23670 To be Published
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2RPB
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2DNL
| Solution structure of RNA binding domain in Cytoplasmic polyadenylation element binding protein 3 | Descriptor: | cytoplasmic polyadenylation element binding protein 3 | Authors: | Tsuda, K, Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-26 | Release date: | 2006-10-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of RNA binding domain in Cytoplasmic polyadenylation element binding protein 3 To be Published
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2DNY
| Solution structure of the third RNA binding domain of FBP-interacting repressor, SIAHBP1 | Descriptor: | Fuse-binding protein-interacting repressor, isoform b | Authors: | Suzuki, S, Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2006-04-27 | Release date: | 2007-04-17 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the third RNA binding domain of FBP-interacting repressor, SIAHBP1 To be Published
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2RPZ
| Solution structure of the monomeric form of mouse APOBEC2 | Descriptor: | Probable C->U-editing enzyme APOBEC-2, ZINC ION | Authors: | Hayashi, F, Nagata, T, Nagashima, T, Muto, Y, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2008-12-11 | Release date: | 2009-12-22 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the monomeric form of mouse APOBEC2 To be Published
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2RPA
| The solution structure of N-terminal domain of microtubule severing enzyme | Descriptor: | Katanin p60 ATPase-containing subunit A1 | Authors: | Iwaya, N, Kuwahara, Y, Unzai, S, Nagata, T, Tomii, K, Goda, N, Tochio, H, Shirakawa, M, Hiroaki, H. | Deposit date: | 2008-05-13 | Release date: | 2009-05-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization J.Biol.Chem., 285, 2010
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