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PDB: 21 results

8V7O
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BU of 8v7o by Molmil
Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6
Descriptor: #58 heavy chain, #58 light chain, Hemagglutinin
Authors:Nagashima, K.A, Mousa, J.J.
Deposit date:2023-12-04
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structural basis for the broad antigenicity of the computationally optimized influenza hemagglutinin X6
To Be Published
2EO1
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BU of 2eo1 by Molmil
Solution structure of the ig domain of human OBSCN protein
Descriptor: CDNA FLJ14124 fis, clone MAMMA1002498
Authors:Nagashima, K, Nagashima, T, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ig domain of human OBSCN protein
To be Published
2EDO
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BU of 2edo by Molmil
Solution structure of the first ig-like domain from human CD48 antigen
Descriptor: CD48 antigen
Authors:Nagashima, K, Nagashima, T, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2007-08-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first ig-like domain from human CD48 antigen
To be Published
2ENY
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BU of 2eny by Molmil
Solution structure of the ig-like domain (2735-2825) of human obscurin
Descriptor: Obscurin
Authors:Nagashima, K, Izumi, K, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ig-like domain (2735-2825) of human obscurin
To be Published
2CR7
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BU of 2cr7 by Molmil
Solution structure of the first PAH domain of the mouse transcriptional repressor SIN3B
Descriptor: Paired amphipathic helix protein Sin3b
Authors:Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-20
Release date:2005-11-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first PAH domain of the mouse transcriptional repressor SIN3B
to be published
2CR6
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BU of 2cr6 by Molmil
Solution structure of the Ig domain (2998-3100) of human obscurin
Descriptor: KIAA1556 protein
Authors:Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-20
Release date:2005-11-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the Ig domain (2998-3100) of human obscurin
To be Published
2D9C
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BU of 2d9c by Molmil
Solution structure of the first ig-like domain of signal-regulatory protein beta-1 (SIRP-beta-1)
Descriptor: Signal-regulatory protein beta-1
Authors:Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-09
Release date:2006-12-09
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the first ig-like domain of signal-regulatory protein beta-1 ( SIRP-beta-1)
To be Published
2DKU
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BU of 2dku by Molmil
Solution structure of the third Ig-like domain of human KIAA1556 protein
Descriptor: KIAA1556 protein
Authors:Nagashima, K, Kurosaki, C, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-14
Release date:2006-10-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the third Ig-like domain of human KIAA1556 protein
To be Published
2DM7
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BU of 2dm7 by Molmil
Solution structure of the 14th Ig-like domain of human KIAA1556 protein
Descriptor: KIAA1556 protein
Authors:Nagashima, K, Kurosaki, C, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-20
Release date:2006-10-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the 14th Ig-like domain of human KIAA1556 protein
To be Published
2DKS
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BU of 2dks by Molmil
Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8
Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 8
Authors:Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-14
Release date:2007-05-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8
To be Published
2EDN
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BU of 2edn by Molmil
Solution structure of the first ig-like domain from human Myosin-binding protein C, fast-type
Descriptor: Myosin-binding protein C, fast-type
Authors:Nagashima, K, Kurosaki, C, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2007-08-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first ig-like domain from human Myosin-binding protein C, fast-type
To be Published
2EDL
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BU of 2edl by Molmil
Solution structure of the ig-like domain (3801-3897) of human obscurin
Descriptor: Obscurin
Authors:Nagashima, K, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2007-08-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ig-like domain (3801-3897) of human obscurin
To be Published
2EO9
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BU of 2eo9 by Molmil
Solution structure of the fifth ig-like domain from human Roundabout homo1
Descriptor: Roundabout homolog 1
Authors:Nagashima, K, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-29
Release date:2007-10-02
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the fifth ig-like domain from human Roundabout homo1
To be Published
7VRJ
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BU of 7vrj by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Tani, K, Kobayashi, K, Hosogi, N, Ji, X.-C, Nagashima, S, Nagashima, K.V.P, Tsukatani, Y, Kanno, R, Hall, M, Yu, L.-J, Ishikawa, I, Okura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
Deposit date:2021-10-23
Release date:2022-05-04
Last modified:2022-06-08
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:A Ca 2+ -binding motif underlies the unusual properties of certain photosynthetic bacterial core light-harvesting complexes.
J.Biol.Chem., 298, 2022
7XXF
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Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E},28~{E})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26,28-dodecaen-5-one, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ...
Authors:Tani, K, Kanno, R, Kurosawa, K, Takaichi, S, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2022-05-30
Release date:2022-11-16
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:An LH1-RC photocomplex from an extremophilic phototroph provides insight into origins of two photosynthesis proteins.
Commun Biol, 5, 2022
2K4H
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BU of 2k4h by Molmil
Solution structure of the HIV-2 myristoylated Matrix protein
Descriptor: HIV-2 myristoylated matrix protein, MYRISTIC ACID
Authors:Saad, J.S, Ablan, S.D, Ghanam, R.H, Kim, A, Andrews, K, Nagashima, K, Freed, E.O, Summers, M.F.
Deposit date:2008-06-08
Release date:2008-08-12
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting.
J.Mol.Biol., 382, 2008
2K4I
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BU of 2k4i by Molmil
Solution structure of HIV-2 myrMA bound to di-C4-PI(4,5)P2
Descriptor: (2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE, HIV-2 myristoylated matrix protein, MYRISTIC ACID
Authors:Saad, J.S, Ablan, S.D, Ghanam, R.H, Kim, A, Andrews, K, Nagashima, K, Freed, E.O, Summers, M.F.
Deposit date:2008-06-08
Release date:2008-08-12
Last modified:2014-01-29
Method:SOLUTION NMR
Cite:Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting.
J.Mol.Biol., 382, 2008
2K4E
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BU of 2k4e by Molmil
Solution structure of the HIV-2 UNMYRISTOYLATED MATRIX PROTEIN
Descriptor: HIV-2 unmyristoylated matrix protein
Authors:Saad, J.S, Ablan, S.D, Ghanam, R.H, Kim, A, Andrews, K, Nagashima, K, Freed, E.O, Summers, M.F.
Deposit date:2008-06-07
Release date:2008-08-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting.
J.Mol.Biol., 382, 2008
7VY2
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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
Authors:Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2021-11-13
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
7VY3
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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
Authors:Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2021-11-13
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
7YML
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BU of 7yml by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, BACTERIOCHLOROPHYLL A, ...
Authors:Tani, K, Kanno, R, Ji, X.-C, Satoh, I, Kobayashi, Y, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Mizoguchi, A, Humbel, B.M, Madigan, M.T, Wang-Otomo, Z.-Y.
Deposit date:2022-07-28
Release date:2023-02-22
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.
Nat Commun, 14, 2023

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