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PDB: 301 results

6J88
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BU of 6j88 by Molmil
Crystal structure of HinD with benzo[b]thiophen analog
Descriptor: N-[(2S)-1-(1-benzothiophen-3-yl)-3-hydroxypropan-2-yl]-N~2~-methyl-L-valinamide, Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J85
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BU of 6j85 by Molmil
Crystal structure of HinD apo
Descriptor: Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J86
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BU of 6j86 by Molmil
Crystal structure of HinD with NMFT
Descriptor: N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-Nalpha-methyl-L-phenylalaninamide, Nocardicin N-oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J83
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BU of 6j83 by Molmil
Crystal structure of TleB with NMVT
Descriptor: Cytochrome P-450, N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-N~2~-methyl-L-valinamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J84
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BU of 6j84 by Molmil
Crystal structure of TleB with hydroxyl analog
Descriptor: (2S)-2-hydroxy-N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-3-methylbutanamide, Cytochrome P-450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nakamura, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
6J87
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BU of 6j87 by Molmil
Crystal structure of HinD with NMFT and NO
Descriptor: N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-Nalpha-methyl-L-phenylalaninamide, NITRIC OXIDE, Nocardicin N-oxygenase, ...
Authors:Fei, H, Mori, T, Abe, I.
Deposit date:2019-01-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis.
Nat.Chem.Biol., 15, 2019
1L5B
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BU of 1l5b by Molmil
DOMAIN-SWAPPED CYANOVIRIN-N DIMER
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, cyanovirin-N
Authors:Barrientos, L.G, Louis, J.M, Botos, I, Mori, T, Han, Z, O'Keefe, B.R, Boyd, M.R, Wlodawer, A, Gronenborn, A.M.
Deposit date:2002-03-06
Release date:2002-05-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures.
Structure, 10, 2002
1L5E
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BU of 1l5e by Molmil
The domain-swapped dimer of CV-N in solution
Descriptor: Cyanovirin-N
Authors:Barrientos, L.G, Louis, J.M, Botos, I, Mori, T, Han, Z, O'Keefe, B.R, Boyd, M.R, Wlodawer, A, Gronenborn, A.M.
Deposit date:2002-03-06
Release date:2002-06-05
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures.
Structure, 10, 2002
1LOM
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BU of 1lom by Molmil
CYANOVIRIN-N DOUBLE MUTANT P51S S52P
Descriptor: CALCIUM ION, Cyanovirin-N, SULFATE ION
Authors:Botos, I, Mori, T, Cartner, L.K, Boyd, M.R, Wlodawer, A.
Deposit date:2002-05-06
Release date:2002-06-26
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Domain-swapped structure of a mutant of cyanovirin-N.
Biochem.Biophys.Res.Commun., 294, 2002
8IYF
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BU of 8iyf by Molmil
Structure of VldE-H182A in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Validamine 7-phosphate valienyltransferase
Authors:Wong, C.P, Mori, T, Mahmud, T, Abe, I.
Deposit date:2023-04-04
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of VldE-H182A in complex with GDP
To Be Published
8IYE
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BU of 8iye by Molmil
Structure of VldE-D158N in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Validamine 7-phosphate valienyltransferase
Authors:Wong, C.P, Mori, T, Mahmud, T, Abe, I.
Deposit date:2023-04-04
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of VldE-D158N in complex with GDP
To Be Published
7VBQ
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BU of 7vbq by Molmil
Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ
Descriptor: FE (III) ION, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxJ, ...
Authors:Li, X, Awakawa, T, Mori, T, Abe, I.
Deposit date:2021-09-01
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
7VBR
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BU of 7vbr by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
Descriptor: Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
Authors:Li, X, Awakawa, T, Mori, T, Abe, I.
Deposit date:2021-09-01
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
7BWW
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BU of 7bww by Molmil
Structure of the engineered metallo-Diels-Alderase DA7 W16S
Descriptor: ACETIC ACID, BENZOIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Basler, S, Mori, T, Hilvert, D.
Deposit date:2020-04-16
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold.
Nat.Chem., 13, 2021
6LCC
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BU of 6lcc by Molmil
Crystal structure of AaTPS apo
Descriptor: AaTPS
Authors:He, H, Mori, T, Abe, I.
Deposit date:2019-11-18
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of AaTPS
Nat Commun, 2020
8JMR
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BU of 8jmr by Molmil
Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one
Descriptor: 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one, Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit, ...
Authors:Ding, Y, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
8JMQ
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BU of 8jmq by Molmil
Crystal structure of hinokiresinol synthase
Descriptor: Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit
Authors:Ding, Y, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
8JMS
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BU of 8jms by Molmil
Crystal structure of BelL from Streptomyces cavourensis
Descriptor: BsmA domain containing protein
Authors:Shimo, S, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of BelL
To Be Published
4ZKF
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BU of 4zkf by Molmil
Crystal structure of human phosphodiesterase 12
Descriptor: 2',5'-phosphodiesterase 12, MAGNESIUM ION
Authors:Kim, S.Y, Kohno, T, Mori, T, Kitano, K, Hakoshima, T.
Deposit date:2015-04-30
Release date:2015-06-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of human phosphodiesterase
To Be Published
5B6B
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BU of 5b6b by Molmil
Complex of LATS1 and phosphomimetic MOB1b
Descriptor: CHLORIDE ION, MOB kinase activator 1B, Serine/threonine-protein kinase LATS1, ...
Authors:KIM, S.-Y, Tachioka, Y, Mori, T, Hakoshima, T.
Deposit date:2016-05-26
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.536 Å)
Cite:Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Sci Rep, 6, 2016
5B5W
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BU of 5b5w by Molmil
Crystal structure of MOB1-LATS1 NTR domain complex
Descriptor: MOB kinase activator 1B, Serine/threonine-protein kinase LATS1, ZINC ION
Authors:KIM, S.-Y, Tachioka, Y, Mori, T, Hakoshima, T.
Deposit date:2016-05-24
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.957 Å)
Cite:Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Sci Rep, 6, 2016
5B5V
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BU of 5b5v by Molmil
Structure of full-length MOB1b
Descriptor: CHLORIDE ION, MOB kinase activator 1B, ZINC ION
Authors:KIM, S.-Y, Tachioka, Y, Mori, T, Hakoshima, T.
Deposit date:2016-05-24
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Sci Rep, 6, 2016
8J5F
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BU of 8j5f by Molmil
Crystal structure of kinase AbmG in complex with cytidine and ADP
Descriptor: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, ADENOSINE-5'-DIPHOSPHATE, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with cytidine and ADP
To Be Published
8J5G
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BU of 8j5g by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
Descriptor: Deoxyadenosine/deoxycytidine kinase, [(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl] phosphono hydrogen phosphate
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
To Be Published
8J5E
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BU of 8j5e by Molmil
Crystal structure of kinase AbmG in complex with 4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-thiocytidine
To Be Published

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