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PDB: 214 results

4P0I
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BU of 4p0i by Molmil
Structure of the PBP NocT
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2014-02-21
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
4ZE8
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BU of 4ze8 by Molmil
PBP AccA from A. tumefaciens C58
Descriptor: 1,2-ETHANEDIOL, ABC transporter, substrate binding protein (Agrocinopines A and B), ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
4ZEI
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BU of 4zei by Molmil
PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-phosphate
Descriptor: 1,2-ETHANEDIOL, 2-O-phosphono-alpha-L-arabinopyranose, ABC transporter, ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-20
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens.
Plos Pathog., 11, 2015
1Y8Z
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BU of 1y8z by Molmil
alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution
Descriptor: 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', CHLORIDE ION, ...
Authors:Lariviere, L, Sommer, N, Morera, S.
Deposit date:2004-12-14
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol., 352, 2005
4JLV
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BU of 4jlv by Molmil
Crystal structure of the chimerical protein CapA1B1 in complex with ADP-Mg
Descriptor: ADENOSINE-5'-DIPHOSPHATE, C-terminal fragment of Membrane protein CapA1, Putative uncharacterized protein capB1, ...
Authors:Gruszczyk, J, Olivares-Illana, V, Nourikyan, J, Fleurie, A, Bechet, E, Aumont-Nicaise, M, Gueguen-Chaignon, V, Morera, S, Grangeasse, C, Nessler, S.
Deposit date:2013-03-13
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Comparative analysis of the Tyr-kinases CapB1 and CapB2 fused to their cognate modulators CapA1 and CapA2 from Staphylococcus aureus
Plos One, 8, 2013
1YA6
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alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a central A:G mismatch
Descriptor: 5'-D(*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', COBALT HEXAMMINE(III), ...
Authors:Lariviere, L, Sommer, N, Morera, S.
Deposit date:2004-12-17
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol., 352, 2005
1Y6G
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BU of 1y6g by Molmil
alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolution
Descriptor: 1,2-ETHANEDIOL, 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', ...
Authors:Lariviere, L, Sommer, N, Morera, S.
Deposit date:2004-12-06
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol., 352, 2005
1XV5
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BU of 1xv5 by Molmil
alpha-glucosyltransferase (AGT) in complex with UDP
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA alpha-glucosyltransferase, ...
Authors:Lariviere, L, Sommer, N, Morera, S.
Deposit date:2004-10-27
Release date:2005-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol., 352, 2005
4JMP
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BU of 4jmp by Molmil
Crystal structure of the chimerical protein CapA2B2
Descriptor: C-terminal fragment of CapA, Protein tyrosine kinase
Authors:Olivares-Illana, V, Morera, S, Grangeasse, C, Nessler, S.
Deposit date:2013-03-14
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Comparative analysis of the Tyr-kinases CapB1 and CapB2 fused to their cognate modulators CapA1 and CapA2 from Staphylococcus aureus
Plos One, 8, 2013
1Y6F
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BU of 1y6f by Molmil
alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site
Descriptor: 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', DI(HYDROXYETHYL)ETHER, ...
Authors:Lariviere, L, Sommer, N, Morera, S.
Deposit date:2004-12-06
Release date:2005-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase.
J.Mol.Biol., 352, 2005
1ANW
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BU of 1anw by Molmil
THE EFFECT OF METAL BINDING ON THE STRUCTURE OF ANNEXIN V AND IMPLICATIONS FOR MEMBRANE BINDING
Descriptor: ANNEXIN V, CALCIUM ION
Authors:Lewit-Bentley, A, Morera, S, Huber, R, Bodo, G.
Deposit date:1993-10-26
Release date:1994-12-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The effect of metal binding on the structure of annexin V and implications for membrane binding.
Eur.J.Biochem., 210, 1992
1BIX
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BU of 1bix by Molmil
THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES
Descriptor: AP ENDONUCLEASE 1, PLATINUM (II) ION, SAMARIUM (III) ION
Authors:Gorman, M.A, Morera, S, Rothwell, D.G, De La Fortelle, E, Mol, C.D, Tainer, J.A, Hickson, I.D, Freemont, P.S.
Deposit date:1998-06-19
Release date:1999-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites.
EMBO J., 16, 1997
1CDZ
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BU of 1cdz by Molmil
BRCT DOMAIN FROM DNA-REPAIR PROTEIN XRCC1
Descriptor: PROTEIN (DNA-REPAIR PROTEIN XRCC1)
Authors:Zhang, X, Morera, S, Bates, P, Whitehead, P, Coffer, A, Hainbucher, K, Nash, R, Sternberg, M, Lindahl, T, Freemont, P.
Deposit date:1999-03-04
Release date:2000-02-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of an XRCC1 BRCT domain: a new protein-protein interaction module.
EMBO J., 17, 1998
5OVZ
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BU of 5ovz by Molmil
High resolution structure of the PBP NocT in complex with nopaline
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-30
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5ITP
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BU of 5itp by Molmil
Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
5ITO
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BU of 5ito by Molmil
Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
4ZA6
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BU of 4za6 by Molmil
Structure of the R. erythropolis transcriptional repressor QsdR from TetR family
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-13
Release date:2015-10-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Natural Guided Genome Engineering Reveals Transcriptional Regulators Controlling Quorum-Sensing Signal Degradation.
Plos One, 10, 2015
5L9O
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BU of 5l9o by Molmil
Crystal structure of Agrobacterium tumefaciens C58 strain PBP SocA in complex with glucopine
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein, ...
Authors:Marty, L, Morera, S.
Deposit date:2016-06-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
5L9L
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BU of 5l9l by Molmil
Crystal structure of the PBP MotA from A. tumefaciens B6 in complex with glucopine
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucopine, ...
Authors:Marty, L, Morera, S.
Deposit date:2016-06-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
5L9S
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BU of 5l9s by Molmil
Structure of Agrobacterium tumefaciens C58 strain PBP AttC in open unliganded conformation
Descriptor: 1,2-ETHANEDIOL, ABC transporter, substrate binding protein (Mannopine), ...
Authors:Marty, L, Morera, S.
Deposit date:2016-06-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
5L9G
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BU of 5l9g by Molmil
Crystal Structure of the PBP MotA in complex with mannopine from A. tumefaciens B6
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, mannopine, ...
Authors:Marty, L, Morera, S.
Deposit date:2016-06-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
5L9I
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BU of 5l9i by Molmil
Crystal structure of the periplasmic binding protein MotA in complex with DFG from A. tumefaciens B6
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Marty, L, Morera, S.
Deposit date:2016-06-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
4OAL
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BU of 4oal by Molmil
Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor CPPU in alternative spacegroup
Descriptor: 1-(2-chloropyridin-4-yl)-3-phenylurea, Cytokinin dehydrogenase 4, DIMETHYL SULFOXIDE, ...
Authors:Kopecny, D, Morera, S, Vigouroux, A, Koncitikova, R.
Deposit date:2014-01-05
Release date:2015-04-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
4O95
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BU of 4o95 by Molmil
Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor CPPU
Descriptor: 1,2-ETHANEDIOL, 1-(2-chloropyridin-4-yl)-3-phenylurea, Cytokinin dehydrogenase 4, ...
Authors:Kopecny, D, Morera, S, Vigouroux, A, Koncitikova, R.
Deposit date:2014-01-01
Release date:2015-04-01
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
3IWJ
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BU of 3iwj by Molmil
Crystal structure of aminoaldehyde dehydrogenase 2 from Pisum sativum (PsAMADH2)
Descriptor: GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative aminoaldehyde dehydrogenase, ...
Authors:Kopecny, D, Morera, S, Briozzo, P.
Deposit date:2009-09-02
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes.
J.Mol.Biol., 396, 2010

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