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PDB: 28 件
1AKL
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ALKALINE PROTEASE FROM PSEUDOMONAS AERUGINOSA IFO3080
分子名称: ALKALINE PROTEASE, CALCIUM ION, ZINC ION
著者Miyatake, H, Hata, Y, Fujii, T, Hamada, K, Morihara, K, Katsube, Y.
登録日1995-09-16
公開日1996-03-08
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the unliganded alkaline protease from Pseudomonas aeruginosa IFO3080 and its conformational changes on ligand binding.
J.Biochem.(Tokyo), 118, 1995
5B56
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BU of 5b56 by Molmil
Crystal structure of HIV-1 VPR C-Terminal domain and DIBB-M-Importin-Alpha2 complex
分子名称: Importin subunit alpha-1, Protein Vpr
著者Miyatake, H, Sanjoh, A, Matusda, G, Murakami, T, Murakami, H, Hagiwara, K, Yokoyama, M, Sato, H, Miyamoto, Y, Dohmae, N, Aida, Y.
登録日2016-04-25
公開日2016-06-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular Mechanism of HIV-1 Vpr for Binding to Importin-alpha
J.Mol.Biol., 428, 2016
6JQA
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BU of 6jqa by Molmil
Crystal structure of phyllogen, a phyllody inducing effector protein of phytoplasma.
分子名称: IODIDE ION, Phytoplasmal effector causing phyllody 1
著者Miyatake, H, Maejima, K.
登録日2019-03-29
公開日2019-05-15
最終更新日2019-05-29
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma.
Biochem.Biophys.Res.Commun., 513, 2019
1EW0
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BU of 1ew0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
分子名称: FIXL, PROTOPORPHYRIN IX CONTAINING FE
著者Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
登録日2000-04-21
公開日2000-05-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1D06
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BU of 1d06 by Molmil
STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION
分子名称: PROTOPORPHYRIN IX CONTAINING FE, nitrogen fixation regulatory protein fixL
著者Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
登録日1999-09-09
公開日2000-03-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
3WPT
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BU of 3wpt by Molmil
Crystal structure of closed dimer of human importin-alpha1 (Rch1)
分子名称: DI(HYDROXYETHYL)ETHER, Importin subunit alpha-1
著者Miyatake, H, Sanjoh, A, Matsuda, G, Tatsumi, Y, Dohmae, N, Aida, Y.
登録日2014-01-17
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.629 Å)
主引用文献Crystal structure of closed dimer of human importin-alpha1 (Rch1)
To be Published
2D98
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BU of 2d98 by Molmil
Structure of VIL (extra KI/I2 added)-xylanase
分子名称: Endo-1,4-beta-xylanase 2, IODIDE ION
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-09
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D8P
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BU of 2d8p by Molmil
Structure of HYPER-VIL-thaumatin
分子名称: IODIDE ION, Thaumatin I
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-08
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D8W
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BU of 2d8w by Molmil
Structure of HYPER-VIL-trypsin
分子名称: CALCIUM ION, Cationic trypsin, IODIDE ION
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-08
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D91
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Structure of HYPER-VIL-lysozyme
分子名称: IODIDE ION, Lysozyme C
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-08
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D97
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BU of 2d97 by Molmil
Structure of VIL-xylanase
分子名称: Endo-1,4-beta-xylanase 2
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-09
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D8O
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BU of 2d8o by Molmil
Structure of VIL-thaumatin
分子名称: IODIDE ION, Thaumatin I
著者Miyatake, H, Hasegawa, T, Yamano, A.
登録日2005-12-07
公開日2006-07-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
1VAU
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BU of 1vau by Molmil
Xenon derivative of hen egg-white lysozyme
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Takeda, K, Miyatake, H, Park, S.Y, Kawamoto, M, Kamiya, N, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-19
公開日2005-03-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
5H0Q
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BU of 5h0q by Molmil
Crystal structure of lipid binding protein Nakanori at 1.5A
分子名称: Lipid binding protein
著者Makino, A, Abe, M, Ishitsuka, R, Murate, M, Kishimoto, T, Sakai, S, Hullin-Matsuda, F, Shimada, Y, Inaba, T, Miyatake, H, Tanaka, H, Kurahashi, A, Pack, C.G, Kasai, R.S, Kubo, S, Schieber, N.L, Dohmae, N, Tochio, N, Hagiwara, K, Sasaki, Y, Aida, Y, Fujimori, F, Kigawa, T, Nishikori, K, Parton, R.G, Kusumi, A, Sako, Y, Anderluh, G, Yamashita, M, Kobayashi, T, Greimel, P, Kobayashi, T.
登録日2016-10-06
公開日2016-10-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C
FASEB J., 31, 2017
1UA8
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BU of 1ua8 by Molmil
Crystal structure of the lipoprotein localization factor, LolA
分子名称: Outer-membrane lipoproteins carrier protein
著者Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
登録日2003-03-04
公開日2003-07-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
5GUG
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BU of 5gug by Molmil
Crystal structure of inositol 1,4,5-trisphosphate receptor large cytosolic domain with inositol 1,4,5-trisphosphate
分子名称: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 1
著者Hamada, K, Miyatake, H, Terauchi, A, Mikoshiba, K.
登録日2016-08-29
公開日2017-04-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (7.399 Å)
主引用文献IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4I3B
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BU of 4i3b by Molmil
Crystal structure of fluorescent protein UnaG wild type
分子名称: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bilirubin-inducible fluorescent protein UnaG, DI(HYDROXYETHYL)ETHER
著者Kumagai, A, Ando, R, Miyatake, H, Miyawaki, A.
登録日2012-11-26
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.199 Å)
主引用文献A bilirubin-inducible fluorescent protein from eel muscle
Cell(Cambridge,Mass.), 153, 2013
4I3D
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BU of 4i3d by Molmil
Crystal structure of fluorescent protein UnaG N57A mutant
分子名称: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bilirubin-inducible fluorescent protein UnaG
著者Kumagai, A, Ando, R, Miyatake, H, Miyawaki, A.
登録日2012-11-26
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.298 Å)
主引用文献A bilirubin-inducible fluorescent protein from eel muscle
Cell(Cambridge,Mass.), 153, 2013
1VAT
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BU of 1vat by Molmil
Iodine derivative of hen egg-white lysozyme
分子名称: IODIDE ION, Lysozyme C
著者Takeda, K, Miyatake, H, Park, S.Y, Kawamoto, M, Kamiya, N, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-19
公開日2005-03-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8
J.Appl.Crystallogr., 37, 2004
1IWM
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BU of 1iwm by Molmil
Crystal Structure of the Outer Membrane Lipoprotein Receptor, LolB
分子名称: Outer Membrane Lipoprotein LolB, SULFATE ION
著者Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
登録日2002-05-17
公開日2003-07-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
1IWL
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BU of 1iwl by Molmil
Crystal Structure of the Lipoprotein Localization Factor, LolA
分子名称: MAGNESIUM ION, Outer-membrane lipoproteins carrier protein, ZINC ION
著者Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
登録日2002-05-17
公開日2003-07-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of bacterial lipoprotein localization factors, LolA and LolB
Embo J., 22, 2003
1IWN
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Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with PEGMME2000
分子名称: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, Outer Membrane Lipoprotein LolB, SULFATE ION
著者Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K.
登録日2002-05-17
公開日2003-07-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of bacterial lipoprotein localization factors, LolA and LolB.
Embo J., 22, 2003
4I3C
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BU of 4i3c by Molmil
Crystal structure of fluorescent protein UnaG N57Q mutant
分子名称: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bilirubin-inducible fluorescent protein UnaG
著者Kumagai, A, Ando, R, Miyatake, H, Miyawaki, A.
登録日2012-11-26
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献A bilirubin-inducible fluorescent protein from eel muscle
Cell(Cambridge,Mass.), 153, 2013
5XA0
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BU of 5xa0 by Molmil
Crystal structure of inositol 1,4,5-trisphosphate receptor cytosolic domain
分子名称: Inositol 1,4,5-trisphosphate receptor type 1
著者Hamada, K, Miyatake, H, Terauchi, A, Mikoshiba, K.
登録日2017-03-10
公開日2017-04-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (5.812 Å)
主引用文献IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XA1
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Crystal structure of inositol 1,4,5-trisphosphate receptor cytosolic domain with inositol 1,4,5-trisphosphate
分子名称: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Inositol 1,4,5-trisphosphate receptor type 1
著者Hamada, K, Miyatake, H, Terauchi, A, Mikoshiba, K.
登録日2017-03-10
公開日2017-04-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (6.204 Å)
主引用文献IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

 

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