2D8O

Structure of VIL-thaumatin

Summary for 2D8O

Related2D8P 2D8W 2D91 2D97 2D98
DescriptorThaumatin I, IODIDE ION (3 entities in total)
Functional Keywordsiodo-tyrosine, vaporizing iodine labeling(vil), unknown function
Biological sourceThaumatococcus daniellii (miracle fruit)
Cellular locationCytoplasmic vesicle P02883
Total number of polymer chains1
Total molecular weight23111.36
Authors
Miyatake, H.,Hasegawa, T.,Yamano, A. (deposition date: 2005-12-07, release date: 2006-07-11, Last modification date: 2011-07-13)
Primary citation
Miyatake, H.,Hasegawa, T.,Yamano, A.
New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL)
ACTA CRYSTALLOGR.,SECT.D, 62:280-289, 2006
PubMed: 16510975 (PDB entries with the same primary citation)
DOI: 10.1107/S0907444905041909
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.38 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.2311100.6%6.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2d8o
no rotation
Molmil generated image of 2d8o
rotated about x axis by 90°
Molmil generated image of 2d8o
rotated about y axis by 90°
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