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PDB: 109 results

1WKV
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Crystal structure of O-phosphoserine sulfhydrylase
Descriptor: ACETATE ION, PYRIDOXAL-5'-PHOSPHATE, cysteine synthase
Authors:Oda, Y, Mino, K, Ishikawa, K, Ataka, M.
Deposit date:2004-06-09
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional Structure of a New Enzyme, O-Phosphoserine Sulfhydrylase, involved in l-Cysteine Biosynthesis by a Hyperthermophilic Archaeon, Aeropyrum pernix K1, at 2.0A Resolution
J.Mol.Biol., 351, 2005
4NKO
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Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.496 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
3FHV
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BU of 3fhv by Molmil
Structural basis of Salmonella typhi type IVb PilS and cystic fibrosis transmembrane conductance regulator (CFTR) interaction
Descriptor: Prepilin, cftr peptide
Authors:Balakrishna, A.M, Swaminathan, K.
Deposit date:2008-12-10
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of typhoid: Salmonella typhi type IVb pilin (PilS) and cystic fibrosis transmembrane conductance regulator interaction.
Proteins, 77, 2009
4NKM
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Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
4NKD
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BU of 4nkd by Molmil
Crystal structure of engineered anti-EE scFv antibody fragment
Descriptor: Engineered scFv
Authors:Kalyoncu, S, Hyun, J, Pai, J.C, Johnson, J.L, Etzminger, K, Jain, A, Heaner Jr, D, Molares, I.A, Truskett, T.M, Maynard, J.A, Lieberman, R.L.
Deposit date:2013-11-12
Release date:2014-03-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.303 Å)
Cite:Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.
Proteins, 82, 2014
3FHU
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Crystal structure of type IV b pilin from Salmonella typhi
Descriptor: Prepilin
Authors:Balakrishna, A.M, Swaminathan, K.
Deposit date:2008-12-10
Release date:2009-10-20
Last modified:2020-09-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of typhoid: Salmonella typhi type IVb pilin (PilS) and cystic fibrosis transmembrane conductance regulator interaction.
Proteins, 77, 2009
7FGL
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BU of 7fgl by Molmil
The complex structure of PHF core domain peptide of tau, VQIVYK, and antibody's Fab domain.
Descriptor: AMMONIUM ION, Fab Heavy Chain, Fab Light Chain, ...
Authors:Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The cross-reaction complex structure with VQIVYK of tau and the antibody's Fab domain.
To Be Published
1Y0O
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crystal structure of reduced AtFKBP13
Descriptor: FKBP-type peptidyl-prolyl cis-trans isomerase 3
Authors:Gayathri, G, Swaminathan, K.
Deposit date:2004-11-15
Release date:2005-11-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of reduced AtFKBP13
to be published
2MJO
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BU of 2mjo by Molmil
NMR structure of p75 transmembrane domain C257A mutant in DPC micelles
Descriptor: Tumor necrosis factor receptor superfamily member 16
Authors:Nadezhdin, K, Arseniev, A, Goncharuk, S, Mineev, K.
Deposit date:2014-01-15
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis of p75 Transmembrane Domain Dimerization.
J. Biol. Chem., 291, 2016
3VUP
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Beta-1,4-mannanase from the common sea hare Aplysia kurodai
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-1,4-mannanase, SULFATE ION
Authors:Mizutani, K, Tsuchiya, S, Toyoda, M, Nanbu, Y, Tominaga, K, Yuasa, K, Takahashi, N, Tsuji, A, Mikami, B.
Deposit date:2012-07-04
Release date:2012-10-17
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution.
Acta Crystallogr.,Sect.F, 68, 2012
3RFY
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BU of 3rfy by Molmil
Crystal structure of arabidopsis thaliana cyclophilin 38 (ATCYP38)
Descriptor: Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic
Authors:Vasudevan, D, Swaminathan, K.
Deposit date:2011-04-07
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of Arabidopsis cyclophilin38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism.
Plant Cell, 24, 2012
3OQT
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BU of 3oqt by Molmil
Crystal structure of Rv1498A protein from mycobacterium tuberculosis
Descriptor: CHLORIDE ION, Rv1498A PROTEIN, SODIUM ION
Authors:Liu, F, Xiong, J, Kumar, S, Yang, C, Li, S, Ge, S, Xia, N, Swaminathan, K.
Deposit date:2010-09-04
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural and biophysical characterization of Mycobacterium tuberculosis dodecin Rv1498A.
J.Struct.Biol., 175, 2011
3PDM
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BU of 3pdm by Molmil
Hibiscus Latent Singapore virus
Descriptor: Coat protein, RNA (5'-R(P*GP*AP*A)-3')
Authors:Tewary, S.K, Wong, S.M, Swaminathan, K.
Deposit date:2010-10-22
Release date:2011-01-12
Last modified:2024-03-20
Method:FIBER DIFFRACTION (3.5 Å)
Cite:Structure of Hibiscus latent Singapore virus by fiber diffraction: A non-conserved His122 contributes to coat protein stability
J.Mol.Biol., 2010
2MIC
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BU of 2mic by Molmil
NMR structure of p75 transmembrane domain in DPC micelles
Descriptor: Tumor necrosis factor receptor superfamily member 16
Authors:Nadezhdin, K, Arseniev, A, Goncharuk, S, Mineev, K.
Deposit date:2013-12-12
Release date:2014-12-24
Last modified:2017-09-06
Method:SOLUTION NMR
Cite:Structural Basis of p75 Transmembrane Domain Dimerization.
J. Biol. Chem., 291, 2016
1WZA
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BU of 1wza by Molmil
Crystal structure of alpha-amylase from H.orenii
Descriptor: CALCIUM ION, alpha-amylase A
Authors:Sivakumar, N, Swaminathan, K, Li, N.
Deposit date:2005-03-03
Release date:2006-04-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition.
Febs Lett., 580, 2006
3WFL
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Crtstal structure of glycoside hydrolase family 5 beta-mannanase from Talaromyces trachyspermus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Suzuki, K, Ichinose, H, Kamino, K, Ogasawara, W, Kaneko, S, Fushinobu, S.
Deposit date:2013-07-19
Release date:2014-07-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, cloning, functional expression, structure, and characterization of a thermostable beta-mannanase from Talaromyces trachyspermus and its efficiency in production of mannooligosaccharides from coffee wastes
To be Published
7C4O
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BU of 7c4o by Molmil
Solution structure of the Orange domain from human protein HES1
Descriptor: Transcription factor HES-1
Authors:Fan, J.S, Nayak, A, Swaminathan, K.
Deposit date:2020-05-18
Release date:2021-05-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Induction of Transcriptional Inhibitor Hairy and Enhancer of Split Homolog-1 and the Related Repression of Tumor-Suppressor Thioredoxin-Interacting Protein Are Important Components of Cell-Transformation Program Imposed by Oncogenic Kinase Nucleophosmin-Anaplastic Lymphoma Kinase.
Am J Pathol, 2022
2H4C
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BU of 2h4c by Molmil
Structure of Daboiatoxin (heterodimeric PLA2 venom)
Descriptor: Phospholipase A2-II, Phospholipase A2-III
Authors:Gopalan, G, Thwin, M.M, Gopalakrishnakone, P, Swaminathan, K.
Deposit date:2006-05-24
Release date:2007-05-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and pharmacological comparison of daboiatoxin from Daboia russelli siamensis with viperotoxin F and vipoxin from other vipers.
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
1HI2
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BU of 1hi2 by Molmil
Eosinophil-derived Neurotoxin (EDN) - Sulphate Complex
Descriptor: EOSINOPHIL-DERIVED NEUROTOXIN, SULFATE ION
Authors:Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI5
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BU of 1hi5 by Molmil
Eosinophil-derived Neurotoxin (EDN) - Adenosine-5'-Diphosphate Complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN
Authors:Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI3
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BU of 1hi3 by Molmil
Eosinophil-derived Neurotoxin (EDN) - Adenosine 2'-5'-Diphosphate Complex
Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN
Authors:Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
1HI4
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BU of 1hi4 by Molmil
Eosinophil-derived Neurotoxin (EDN) - Adenosien-3'-5'-Diphosphate Complex
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN
Authors:Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R.
Deposit date:2001-01-02
Release date:2001-05-31
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors
J.Biol.Chem., 276, 2001
2LJ7
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BU of 2lj7 by Molmil
3D solution structure of plant defensin Lc-def
Descriptor: Defensin Lc-def
Authors:Shenkarev, Z, Mineev, K, Gizatullina, A.
Deposit date:2011-09-07
Release date:2012-09-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Heterologous expression and solution structure of defensin from lentil Lens culinaris.
Biochem.Biophys.Res.Commun., 451, 2014
3RI4
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BU of 3ri4 by Molmil
Ets1 cooperative binding to widely separated sites on promoter DNA
Descriptor: Isoform Ets-1 p27 of Protein C-ets-1, TCR alpha promoter DNA
Authors:Babayeva, N.D, Mino, K, Tahirov, T.H.
Deposit date:2011-04-12
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of ets1 cooperative binding to widely separated sites on promoter DNA.
Plos One, 7, 2012
1UII
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BU of 1uii by Molmil
Crystal structure of Geminin coiled-coil domain
Descriptor: Geminin
Authors:Yuan, P, Swaminathan, K, Robinson, H.
Deposit date:2003-07-16
Release date:2004-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:A dimerized coiled-coil domain and an adjoining part of geminin interact with two sites on Cdt1 for replication inhibition
Mol.Cell, 15, 2004

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