3AFM
 
 | | Crystal structure of aldose reductase A1-R responsible for alginate metabolism | | 分子名称: | Carbonyl reductase | | 著者 | Takase, R, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-03-10 | | 公開日 | 2010-08-11 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
Biochim.Biophys.Acta, 1804, 2010
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3A74
 | | Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with Diadenosine Tetraphosphate (AP4A) | | 分子名称: | 2,6-DIAMINO-HEXANOIC ACID AMIDE, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Lysyl-tRNA synthetase, ... | | 著者 | Sakurama, H, Takita, T, Mikami, B, Itoh, T, Yasukawa, K, Inouye, K. | | 登録日 | 2009-09-13 | | 公開日 | 2010-09-22 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal Structure of Lysyl-tRNA Synthetase from Bacillus stearothermophilus in Complex with Diadenosine Tetraphosphate (AP4A): Insights into AP4A Synthesis Mechanisms and Implication for Recognition of Discriminator Base of tRNA^Lys
To be Published
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3A9Q
 | | Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4 | | 分子名称: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | | 著者 | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | | 登録日 | 2009-11-05 | | 公開日 | 2009-12-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.896 Å) | | 主引用文献 | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
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1YUL
 | | Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa | | 分子名称: | CITRIC ACID, Probable nicotinate-nucleotide adenylyltransferase | | 著者 | Yoon, H.J, Kim, H.L, Mikami, B, Suh, S.W. | | 登録日 | 2005-02-14 | | 公開日 | 2005-11-08 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation
J.Mol.Biol., 351, 2005
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3AJP
 | | Crystal structure of human H ferritin E140A mutant | | 分子名称: | Ferritin heavy chain, MAGNESIUM ION | | 著者 | Masuda, T, Mikami, B. | | 登録日 | 2010-06-11 | | 公開日 | 2010-08-25 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (1.901 Å) | | 主引用文献 | The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
Biochem.Biophys.Res.Commun., 400, 2010
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3ALD
 | | Crystal structure of sweet-tasting protein Thaumatin I at 1.10 A | | 分子名称: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | | 著者 | Masuda, T, Mikami, B, Kitabatake, N. | | 登録日 | 2010-07-29 | | 公開日 | 2011-06-08 | | 最終更新日 | 2011-11-02 | | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | | 主引用文献 | High-resolution structure of the recombinant sweet-tasting protein thaumatin I
Acta Crystallogr.,Sect.F, 67, 2011
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3AMI
 | | The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 | | 分子名称: | zinc peptidase | | 著者 | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-08-20 | | 公開日 | 2011-02-02 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase
J.Mol.Biol., 407, 2011
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3ANJ
 | | Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae | | 分子名称: | Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AFL
 | | Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase | | 著者 | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-03-09 | | 公開日 | 2010-04-28 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | | 主引用文献 | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
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3ANK
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | | 分子名称: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AJO
 | | Crystal structure of wild-type human ferritin H chain | | 分子名称: | Ferritin heavy chain, MAGNESIUM ION | | 著者 | Masuda, T, Mikami, B. | | 登録日 | 2010-06-11 | | 公開日 | 2010-08-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.52 Å) | | 主引用文献 | The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
Biochem.Biophys.Res.Commun., 400, 2010
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3AJ3
 | | Crystal structure of selenomethionine substituted 4-pyridoxolactonase from Mesorhizobium loti | | 分子名称: | 4-pyridoxolactonase, PHOSPHATE ION, ZINC ION | | 著者 | Kobayashi, J, Yoshikane, Y, Baba, S, Mikami, B, Yagi, T. | | 登録日 | 2010-05-21 | | 公開日 | 2011-05-25 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.577 Å) | | 主引用文献 | Structure of 4-pyridoxolactonase from Mesorhizobium loti.
Acta Crystallogr.,Sect.F, 70, 2014
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1YUN
 | | Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Probable nicotinate-nucleotide adenylyltransferase | | 著者 | Yoon, H.J, Kim, H.L, Mikami, B, Suh, S.W. | | 登録日 | 2005-02-14 | | 公開日 | 2005-11-08 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation
J.Mol.Biol., 351, 2005
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3AFO
 | | Crystal Structure of Yeast NADH Kinase complexed with NADH | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, NADH kinase POS5 | | 著者 | Ando, T, Ohashi, K, Ochiai, A, Miyagi, H, Kawai, S, Mikami, B, Murata, K. | | 登録日 | 2010-03-10 | | 公開日 | 2011-03-16 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | The structural factor conferring NADH kinase activity on yeast mitochondrial Pos5
To be Published
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3ANI
 | | Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae | | 分子名称: | Putative uncharacterized protein gbs1889 | | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-09-02 | | 公開日 | 2010-10-06 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
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3AOK
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3ATG
 | | endo-1,3-beta-glucanase from Cellulosimicrobium cellulans | | 分子名称: | CALCIUM ION, GLUCANASE, GLYCEROL, ... | | 著者 | Tanabe, Y, Pang, Z, Oda, M, Mikami, B. | | 登録日 | 2011-01-04 | | 公開日 | 2012-01-18 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Structural and thermodynamic characterization of endo-1,3-beta-glucanase: Insights into the substrate recognition mechanism.
Biochim. Biophys. Acta, 1866, 2018
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3AT7
 | | Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | | 分子名称: | Alginate-binding flagellin | | 著者 | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2010-12-27 | | 公開日 | 2011-02-23 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
Biochem.Biophys.Res.Commun., 405, 2011
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1YUM
 | | Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa | | 分子名称: | 'Probable nicotinate-nucleotide adenylyltransferase, CITRIC ACID, NICOTINATE MONONUCLEOTIDE | | 著者 | Yoon, H.J, Kim, H.L, Mikami, B, Suh, S.W. | | 登録日 | 2005-02-14 | | 公開日 | 2005-11-08 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation
J.Mol.Biol., 351, 2005
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3BIK
 | | Crystal Structure of the PD-1/PD-L1 Complex | | 分子名称: | GLYCEROL, Programmed cell death 1 ligand 1, Programmed cell death protein 1 | | 著者 | Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N. | | 登録日 | 2007-11-30 | | 公開日 | 2008-02-26 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | | 主引用文献 | The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors.
Proc.Natl.Acad.Sci.Usa, 105, 2008
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3BIS
 | | Crystal Structure of the PD-L1 | | 分子名称: | Programmed cell death 1 ligand 1 | | 著者 | Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N. | | 登録日 | 2007-11-30 | | 公開日 | 2008-02-26 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.64 Å) | | 主引用文献 | The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors.
Proc.Natl.Acad.Sci.Usa, 105, 2008
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3WXS
 | | Thaumatin structure determined by SPring-8 Angstrom Compact free electron Laser (SACLA) | | 分子名称: | L(+)-TARTARIC ACID, thaumatin I | | 著者 | Masuda, T, Nango, E, Sugahara, M, Mizohata, E, Tanaka, T, Tanaka, R, Suzuki, M, Mikami, B, Iwata, S. | | 登録日 | 2014-08-07 | | 公開日 | 2014-11-05 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Grease matrix as a versatile carrier of proteins for serial crystallography
Nat. Methods, 12, 2015
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