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PDB: 322 件
5YNE
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BU of 5yne by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin
分子名称: CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), DI(HYDROXYETHYL)ETHER, ...
著者Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
登録日2017-10-24
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.199 Å)
主引用文献Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YN7
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BU of 5yn7 by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 0.1 mM beta-cyclodextrin
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
著者Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
登録日2017-10-24
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.586 Å)
主引用文献Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YND
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BU of 5ynd by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM gamma-cyclodextrin
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, DUF3372 domain-containing protein, ...
著者Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
登録日2017-10-24
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.227 Å)
主引用文献Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNH
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BU of 5ynh by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM gamma-cyclodextrin
分子名称: CALCIUM ION, Cyclooctakis-(1-4)-(alpha-D-glucopyranose), GLYCEROL, ...
著者Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
登録日2017-10-24
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
3WIW
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BU of 3wiw by Molmil
Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88
著者Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-26
公開日2014-01-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.
J.Biol.Chem., 289, 2014
2FV0
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BU of 2fv0 by Molmil
UGL_D88N/dGlcA-Glc-Rha-Glc
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2006-01-28
公開日2006-05-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
1WW5
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BU of 1ww5 by Molmil
Agrocybe cylindracea galectin complexed with 3'-sulfonyl lactose
分子名称: 3-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
著者Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
登録日2005-01-03
公開日2005-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
2D5H
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BU of 2d5h by Molmil
Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
分子名称: CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit
著者Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S.
登録日2005-11-01
公開日2006-11-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 2010
2D8L
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BU of 2d8l by Molmil
Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, Putative glycosyl hydrolase yteR
著者Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
登録日2005-12-06
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide
J.Mol.Biol., 360, 2006
2D5F
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BU of 2d5f by Molmil
Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
分子名称: CARBONATE ION, MAGNESIUM ION, glycinin A3B4 subunit
著者Itoh, T, Adachi, M, Masuda, T, Mikami, B, Utsumi, S.
登録日2005-11-01
公開日2006-11-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 2010
2EA7
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BU of 2ea7 by Molmil
Crystal Structure of Adzuki Bean 7S Globulin-1
分子名称: 7S globulin-1, ACETIC ACID, CALCIUM ION
著者Fukuda, T, Mikami, B, Utsumi, S.
登録日2007-01-30
公開日2008-02-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops.
J.Agric.Food Chem., 56, 2008
2EAA
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BU of 2eaa by Molmil
Crystal Structure of Adzuki Bean 7S Globulin-3
分子名称: 7S globulin-3, ACETIC ACID, CALCIUM ION, ...
著者Fukuda, T, Mikami, B, Utsumi, S.
登録日2007-01-31
公開日2008-02-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops.
J.Agric.Food Chem., 56, 2008
3T37
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BU of 3t37 by Molmil
Crystal structure of pyridoxine 4-oxidase from Mesorbium loti
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Probable dehydrogenase
著者Mugo, A.N, Kobayashi, J, Mikami, B, Ohnishi, K, Yagi, T.
登録日2011-07-25
公開日2012-08-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.193 Å)
主引用文献Structure biology and crystallization communication
TO BE PUBLISHED
1UKP
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BU of 1ukp by Molmil
Crystal structure of soybean beta-amylase mutant substituted at surface region
分子名称: Beta-amylase, SULFATE ION
著者Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S.
登録日2003-08-31
公開日2004-02-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
1UKO
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BU of 1uko by Molmil
Crystal structure of soybean beta-amylase mutant substituted at surface region
分子名称: Beta-amylase, SULFATE ION
著者Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S.
登録日2003-08-30
公開日2004-02-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
1WW6
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BU of 1ww6 by Molmil
Agrocybe cylindracea galectin complexed with lactose
分子名称: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
著者Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
登録日2005-01-03
公開日2005-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
1WW4
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BU of 1ww4 by Molmil
Agrocybe cylindracea galectin complexed with NeuAca2-3lactose
分子名称: N-acetyl-alpha-neuraminic acid-(2-3)-alpha-D-galactopyranose-(1-4)-alpha-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
著者Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
登録日2004-12-31
公開日2005-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
3VNX
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BU of 3vnx by Molmil
Crystal structure of ferritin from multicellular green algae, Ulva pertusa.
分子名称: CALCIUM ION, ferritin
著者Masuda, T, Morimoto, S.I, Mikami, B, Toyohara, H.
登録日2012-01-18
公開日2012-03-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity.
Protein Sci., 21, 2012
3VM5
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BU of 3vm5 by Molmil
Recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris
分子名称: CALCIUM ION, CHLORIDE ION, alpha-amylase
著者Mizutani, K, Toyoda, M, Mikami, B.
登録日2011-12-08
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris.
Biochim.Biophys.Acta, 1824, 2012
3VWO
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BU of 3vwo by Molmil
Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Peptidoglycan hydrolase FlgJ
著者Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-08-30
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
To be Published
3VHG
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BU of 3vhg by Molmil
Recombinant thaumatin I at PH 8.0
分子名称: GLYCEROL, Thaumatin I
著者Masuda, T, Mikami, B, Kitabatake, N, Tani, F.
登録日2011-08-24
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Recombinat thaumatin I at pH 8.0
To be Published
3VLV
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BU of 3vlv by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
2Z9X
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BU of 2z9x by Molmil
Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine
分子名称: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, ALANINE, Aspartate aminotransferase, ...
著者Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T.
登録日2007-09-26
公開日2007-11-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
3WOU
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BU of 3wou by Molmil
Crystal Structure of The Recombinant Thaumatin II at 0.99 A
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-2
著者Masuda, T, Mikami, B, Tani, F.
登録日2013-12-30
公開日2014-10-22
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues
Biochimie, 106, 2014
3WUX
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BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
分子名称: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
著者Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-08
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published

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