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PDB: 29 results

7P1K
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BU of 7p1k by Molmil
Cryo EM structure of bison NHA2 in nano disc structure
Descriptor: CHOLESTEROL HEMISUCCINATE, Phosphatidylinositol, mitochondrial sodium/hydrogen exchanger 9B2
Authors:Matsuoka, R, Fudim, R, Jung, S, Drew, D.
Deposit date:2021-07-01
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
7P1I
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BU of 7p1i by Molmil
Cryo EM structure of bison NHA2 in detergent and N-terminal extension helix
Descriptor: mitochondrial sodium/hydrogen exchanger 9B2
Authors:Matsuoka, R, Fudim, R, Jung, S, Drew, D.
Deposit date:2021-07-01
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
7P1J
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BU of 7p1j by Molmil
Cryo EM structure of bison NHA2 in detergent structure
Descriptor: mitochondrial sodium/hydrogen exchanger 9B2
Authors:Matsuoka, R, Fudim, R, Jung, S, Drew, D.
Deposit date:2021-07-01
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
5AZ6
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BU of 5az6 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ7
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BU of 5az7 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 4-residue spacer in the connector helix
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ8
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BU of 5az8 by Molmil
Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Descriptor: ACETYLAMINO-ACETIC ACID, Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ9
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BU of 5az9 by Molmil
Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZA
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BU of 5aza by Molmil
Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
Descriptor: CALCIUM ION, Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
3WOV
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BU of 3wov by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
Descriptor: CALCIUM ION, Oligosaccharyl transferase
Authors:Matsuoka, R, Nyirenda, J, Maita, N, Kohda, D.
Deposit date:2014-01-05
Release date:2014-01-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
To be Published
6Z3Z
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BU of 6z3z by Molmil
CryoEM structure of horse sodium/proton exchanger NHE9 without C-terminal regulatory domain in an inward-facing conformation
Descriptor: Sodium/hydrogen exchanger
Authors:Winkelmann, I, Matsuoka, R, Meier, P, Drew, D.
Deposit date:2020-05-22
Release date:2020-11-04
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9.
Embo J., 39, 2020
7S24
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BU of 7s24 by Molmil
Crystal structure of the Na+/H+ antiporter NhaA at pH 6.5
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Na(+)/H(+) antiporter NhaA, PENTAETHYLENE GLYCOL
Authors:Drew, D, Brock, J, Uzdavinys, P, Matsuoka, R.
Deposit date:2021-09-03
Release date:2022-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the Na + /H + antiporter NhaA at active pH reveals the mechanistic basis for pH sensing.
Nat Commun, 13, 2022
6Z3Y
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BU of 6z3y by Molmil
CryoEM structure of horse sodium/proton exchanger NHE9 in an inward-facing conformation
Descriptor: Sodium/hydrogen exchanger
Authors:Winkelmannm, I, Matsuoka, R, Meier, P, Drew, D.
Deposit date:2020-05-22
Release date:2020-11-04
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9.
Embo J., 39, 2020
5UQY
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BU of 5uqy by Molmil
Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ENVELOPE GLYCOPROTEIN GP1, ...
Authors:Hashiguchi, T, Fusco, M.L, Hastie, K.M, Bomholdt, Z.A, Lee, J.E, Flyak, A.I, Matsuoka, R, Kohda, D, Yanagi, Y, Hammel, M, Crowe, J.E, Saphire, E.O.
Deposit date:2017-02-08
Release date:2017-03-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for Marburg virus neutralization by a cross-reactive human antibody.
Cell, 160, 2015
6RW3
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BU of 6rw3 by Molmil
The molecular basis for sugar import in malaria parasites.
Descriptor: Hexose transporter 1, alpha-D-glucopyranose, beta-D-glucopyranose
Authors:Qureshi, A, Matsuoka, R, Brock, J, Drew, D.
Deposit date:2019-06-03
Release date:2020-01-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:The molecular basis for sugar import in malaria parasites.
Nature, 578, 2020
8QSN
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BU of 8qsn by Molmil
Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8
Descriptor: Solute carrier family 15 member 4
Authors:Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
Deposit date:2023-10-10
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8
To Be Published
8QSM
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BU of 8qsm by Molmil
Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG
Descriptor: Solute carrier family 15 member 4
Authors:Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
Deposit date:2023-10-10
Release date:2023-10-25
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG
To Be Published
8QSL
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BU of 8qsl by Molmil
Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
Deposit date:2023-10-10
Release date:2023-10-25
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG
To Be Published
8QSK
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BU of 8qsk by Molmil
Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
Authors:Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
Deposit date:2023-10-10
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc
To Be Published
5B2D
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BU of 5b2d by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
8PXB
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BU of 8pxb by Molmil
Cryo-EM structure of horse NHE9 with a extracellular loop
Descriptor: Sodium/hydrogen exchanger 9
Authors:Kokane, S, Meier, P, Matsuoka, R, Drew, D.
Deposit date:2023-07-23
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:PIP2 mediated oligomerization of the endosomal sodium/proton exchanger NHE9
To Be Published
5ZFU
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BU of 5zfu by Molmil
Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)
Descriptor: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
Authors:Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5YXW
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BU of 5yxw by Molmil
Crystal structure of the prefusion form of measles virus fusion protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
Authors:Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
Deposit date:2017-12-07
Release date:2018-02-21
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (2.776 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZD
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BU of 5yzd by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
Authors:Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.636 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5ZFP
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BU of 5zfp by Molmil
Structure of the ExbB/ExbD hexameric complex
Descriptor: Biopolymer transport protein ExbB
Authors:Maki-Yonekura, S, Matsuoka, R, Yonekura, K.
Deposit date:2018-03-06
Release date:2018-05-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5YZC
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BU of 5yzc by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor compound (AS-48)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-nitro-2-[(phenylacetyl)amino]benzamide, ...
Authors:Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

 

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