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PDB: 28 件

7P1K
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Cryo EM structure of bison NHA2 in nano disc structure
分子名称: CHOLESTEROL HEMISUCCINATE, Phosphatidylinositol, mitochondrial sodium/hydrogen exchanger 9B2
著者Matsuoka, R, Fudim, R, Jung, S, Drew, D.
登録日2021-07-01
公開日2022-01-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.64 Å)
主引用文献Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
7P1J
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BU of 7p1j by Molmil
Cryo EM structure of bison NHA2 in detergent structure
分子名称: mitochondrial sodium/hydrogen exchanger 9B2
著者Matsuoka, R, Fudim, R, Jung, S, Drew, D.
登録日2021-07-01
公開日2022-01-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
7P1I
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BU of 7p1i by Molmil
Cryo EM structure of bison NHA2 in detergent and N-terminal extension helix
分子名称: mitochondrial sodium/hydrogen exchanger 9B2
著者Matsuoka, R, Fudim, R, Jung, S, Drew, D.
登録日2021-07-01
公開日2022-01-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Structure, mechanism and lipid-mediated remodeling of the mammalian Na + /H + exchanger NHA2.
Nat.Struct.Mol.Biol., 29, 2022
5AZ7
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BU of 5az7 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 4-residue spacer in the connector helix
分子名称: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Matsuoka, R, Kohda, D.
登録日2015-09-27
公開日2016-01-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ8
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BU of 5az8 by Molmil
Crystal structure of MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
分子名称: ACETYLAMINO-ACETIC ACID, Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Matsuoka, R, Kohda, D.
登録日2015-09-27
公開日2016-01-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ9
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Crystal structure of (5-residue deleted)MBP-Tom20 fusion protein tethered with ALDH presequence via a disulfide bond
分子名称: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog
著者Matsuoka, R, Kohda, D.
登録日2015-09-27
公開日2016-01-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZ6
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BU of 5az6 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
分子名称: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Matsuoka, R, Kohda, D.
登録日2015-09-27
公開日2016-01-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5AZA
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BU of 5aza by Molmil
Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
分子名称: CALCIUM ION, Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Matsuoka, R, Kohda, D.
登録日2015-09-27
公開日2016-01-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
3WOV
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BU of 3wov by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
分子名称: CALCIUM ION, Oligosaccharyl transferase
著者Matsuoka, R, Nyirenda, J, Maita, N, Kohda, D.
登録日2014-01-05
公開日2014-01-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
To be Published
6RW3
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The molecular basis for sugar import in malaria parasites.
分子名称: Hexose transporter 1, alpha-D-glucopyranose, beta-D-glucopyranose
著者Qureshi, A, Matsuoka, R, Brock, J, Drew, D.
登録日2019-06-03
公開日2020-01-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献The molecular basis for sugar import in malaria parasites.
Nature, 578, 2020
7S24
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BU of 7s24 by Molmil
Crystal structure of the Na+/H+ antiporter NhaA at pH 6.5
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Na(+)/H(+) antiporter NhaA, PENTAETHYLENE GLYCOL
著者Drew, D, Brock, J, Uzdavinys, P, Matsuoka, R.
登録日2021-09-03
公開日2022-08-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the Na + /H + antiporter NhaA at active pH reveals the mechanistic basis for pH sensing.
Nat Commun, 13, 2022
6Z3Y
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CryoEM structure of horse sodium/proton exchanger NHE9 in an inward-facing conformation
分子名称: Sodium/hydrogen exchanger
著者Winkelmannm, I, Matsuoka, R, Meier, P, Drew, D.
登録日2020-05-22
公開日2020-11-04
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.51 Å)
主引用文献Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9.
Embo J., 39, 2020
6Z3Z
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BU of 6z3z by Molmil
CryoEM structure of horse sodium/proton exchanger NHE9 without C-terminal regulatory domain in an inward-facing conformation
分子名称: Sodium/hydrogen exchanger
著者Winkelmann, I, Matsuoka, R, Meier, P, Drew, D.
登録日2020-05-22
公開日2020-11-04
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9.
Embo J., 39, 2020
5UQY
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BU of 5uqy by Molmil
Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ENVELOPE GLYCOPROTEIN GP1, ...
著者Hashiguchi, T, Fusco, M.L, Hastie, K.M, Bomholdt, Z.A, Lee, J.E, Flyak, A.I, Matsuoka, R, Kohda, D, Yanagi, Y, Hammel, M, Crowe, J.E, Saphire, E.O.
登録日2017-02-08
公開日2017-03-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural basis for Marburg virus neutralization by a cross-reactive human antibody.
Cell, 160, 2015
8QSN
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BU of 8qsn by Molmil
Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8
分子名称: Solute carrier family 15 member 4
著者Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
登録日2023-10-10
公開日2023-10-25
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8
To Be Published
8QSM
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BU of 8qsm by Molmil
Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG
分子名称: Solute carrier family 15 member 4
著者Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
登録日2023-10-10
公開日2023-10-25
実験手法ELECTRON MICROSCOPY (3.69 Å)
主引用文献Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG
To Be Published
8QSL
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BU of 8qsl by Molmil
Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
著者Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
登録日2023-10-10
公開日2023-10-25
実験手法ELECTRON MICROSCOPY (2.81 Å)
主引用文献Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG
To Be Published
8QSK
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BU of 8qsk by Molmil
Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
著者Rehan, S, Matsuoka, R, Jazayeri, A, Duerr, K.L.
登録日2023-10-10
公開日2023-11-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc
To Be Published
5ZFU
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BU of 5zfu by Molmil
Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)
分子名称: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
著者Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
登録日2018-03-07
公開日2018-05-09
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5ZFP
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Structure of the ExbB/ExbD hexameric complex
分子名称: Biopolymer transport protein ExbB
著者Maki-Yonekura, S, Matsuoka, R, Yonekura, K.
登録日2018-03-06
公開日2018-05-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5YZD
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BU of 5yzd by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.636 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZC
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BU of 5yzc by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor compound (AS-48)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-nitro-2-[(phenylacetyl)amino]benzamide, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.334 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YXW
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BU of 5yxw by Molmil
Crystal structure of the prefusion form of measles virus fusion protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-07
公開日2018-02-21
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.776 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5ZFV
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Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM)
分子名称: 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB
著者Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S.
登録日2018-03-07
公開日2018-05-09
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
6JJN
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Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to sialyl lewisX
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, ...
著者Kubota, M, Matsuoka, R, Suzuki, T, Yonekura, K, Yanagi, Y, Hashiguchi, T.
登録日2019-02-26
公開日2019-05-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus.
J.Virol., 93, 2019

 

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件を2024-07-24に公開中

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