6KO9
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![BU of 6ko9 by Molmil](/molmil-images/mine/6ko9) | Crystal structure of the Gefitinib Intermediate 1 bound RamR determined with XtaLAB Synergy | Descriptor: | 4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-methoxy-quinazolin-6-ol, Putative regulatory protein, SULFATE ION | Authors: | Matsumoto, T, Nakashima, R, Yamano, A, Nishino, K. | Deposit date: | 2019-08-08 | Release date: | 2019-10-09 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Development of a structure determination method using a multidrug-resistance regulator protein as a framework. Biochem.Biophys.Res.Commun., 518, 2019
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6KO8
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![BU of 6ko8 by Molmil](/molmil-images/mine/6ko8) | Crystal structure of the Cholic acid bound RamR determined with XtaLAB Synergy | Descriptor: | CHOLIC ACID, Putative regulatory protein, SULFATE ION | Authors: | Matsumoto, T, Nakashima, R, Yamano, A, Nishino, K. | Deposit date: | 2019-08-08 | Release date: | 2019-10-09 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Development of a structure determination method using a multidrug-resistance regulator protein as a framework. Biochem.Biophys.Res.Commun., 518, 2019
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3I9T
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![BU of 3i9t by Molmil](/molmil-images/mine/3i9t) | Crystal structure of the rat heme oxygenase (HO-1) in complex with heme binding dithiothreitol (DTT) | Descriptor: | (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Matsui, T, Unno, M, Ikeda-Saito, M. | Deposit date: | 2009-07-13 | Release date: | 2010-05-19 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase. Inorg.Chem., 49, 2010
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3I9U
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![BU of 3i9u by Molmil](/molmil-images/mine/3i9u) | Crystal structure of the rat heme oxygenase (HO-1) in complex with heme binding dithioerythritol (DTE) | Descriptor: | (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Matsui, T, Unno, M, Ikeda-Saito, M. | Deposit date: | 2009-07-13 | Release date: | 2010-05-19 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase. Inorg.Chem., 49, 2010
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5GLO
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![BU of 5glo by Molmil](/molmil-images/mine/5glo) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose, calcium-free form | Descriptor: | ACETATE ION, Glycoside hydrolase family 43, SODIUM ION, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLQ
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![BU of 5glq by Molmil](/molmil-images/mine/5glq) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose and xylotriose, calcium-free form | Descriptor: | Glycoside hydrolase family 43, SODIUM ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLL
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![BU of 5gll by Molmil](/molmil-images/mine/5gll) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome, calcium-bound form | Descriptor: | ACETATE ION, CALCIUM ION, GLYCEROL, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLN
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![BU of 5gln by Molmil](/molmil-images/mine/5gln) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with xylotriose, calcium-bound form | Descriptor: | ACETATE ION, CALCIUM ION, Glycoside hydrolase family 43, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLP
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![BU of 5glp by Molmil](/molmil-images/mine/5glp) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose, calcium-bound form | Descriptor: | ACETATE ION, CALCIUM ION, Glycoside hydrolase family 43, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLM
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![BU of 5glm by Molmil](/molmil-images/mine/5glm) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compost microbial metagenome in complex with xylotriose, calcium-free form. | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, Glycoside hydrolase family 43, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLK
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![BU of 5glk by Molmil](/molmil-images/mine/5glk) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compost microbial metagenome, calcium-free form. | Descriptor: | ACETATE ION, GLYCEROL, Glycoside hydrolase family 43, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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5GLR
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![BU of 5glr by Molmil](/molmil-images/mine/5glr) | Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with l-arabinose and xylotriose, calcium-bound form | Descriptor: | CALCIUM ION, Glycoside hydrolase family 43, SODIUM ION, ... | Authors: | Matsuzawa, T, Kishine, N, Fujimoto, Z, Yaoi, K. | Deposit date: | 2016-07-12 | Release date: | 2017-03-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem., 162, 2017
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2Z9S
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![BU of 2z9s by Molmil](/molmil-images/mine/2z9s) | Crystal Structure Analysis of rat HBP23/Peroxiredoxin I, Cys52Ser mutant | Descriptor: | Peroxiredoxin-1 | Authors: | Matsumura, T, Okamoto, K, Nishino, T, Abe, Y. | Deposit date: | 2007-09-25 | Release date: | 2007-11-20 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Dimer-Oligomer Interconversion of Wild-type and Mutant Rat 2-Cys Peroxiredoxin: DISULFIDE FORMATION AT DIMER-DIMER INTERFACES IS NOT ESSENTIAL FOR DECAMERIZATION J.Biol.Chem., 283, 2008
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2DI2
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![BU of 2di2 by Molmil](/molmil-images/mine/2di2) | NMR structure of the HIV-2 nucleocapsid protein | Descriptor: | Nucleocapsid protein p7, ZINC ION | Authors: | Matsui, T, Kodera, Y, Endoh, H, Miyauchi, E, Komatsu, H, Sato, K, Tanaka, T, Kohno, T, Maeda, T. | Deposit date: | 2006-03-27 | Release date: | 2007-03-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | RNA Recognition Mechanism of the Minimal Active Domain of the Human Immunodeficiency Virus Type-2 Nucleocapsid Protein J.Biochem.(Tokyo), 141, 2007
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1WNV
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![BU of 1wnv by Molmil](/molmil-images/mine/1wnv) | D136A mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO) | Descriptor: | Heme oxygenase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | Authors: | Matsui, T, Unno, M, Ikeda-Saito, M. | Deposit date: | 2004-08-10 | Release date: | 2004-11-09 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Roles of Distal Asp in Heme Oxygenase from Corynebacterium diphtheriae, HmuO: A WATER-DRIVEN OXYGEN ACTIVATION MECHANISM J.Biol.Chem., 280, 2005
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3ALO
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![BU of 3alo by Molmil](/molmil-images/mine/3alo) | Crystal structure of human non-phosphorylated MKK4 kinase domain ternary complex with AMP-PNP and p38 peptide | Descriptor: | Dual specificity mitogen-activated protein kinase kinase 4, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | Authors: | Matsumoto, T, Kinoshita, T, Kirii, Y, Yokota, K, Hamada, K, Tada, T. | Deposit date: | 2010-08-04 | Release date: | 2010-10-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structures of MKK4 kinase domain reveal that substrate peptide binds to an allosteric site and induces an auto-inhibition state Biochem.Biophys.Res.Commun., 400, 2010
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2E1X
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![BU of 2e1x by Molmil](/molmil-images/mine/2e1x) | NMR structure of the HIV-2 nucleocapsid protein | Descriptor: | Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION | Authors: | Matsui, T, Kodera, Y, Miyauchi, E, Tanaka, H, Endoh, H, Komatsu, H, Tanaka, T, Kohno, T, Maeda, T. | Deposit date: | 2006-11-03 | Release date: | 2007-06-05 | Last modified: | 2022-03-09 | Method: | SOLUTION NMR | Cite: | Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality Biochem.Biophys.Res.Commun., 358, 2007
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2EC7
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![BU of 2ec7 by Molmil](/molmil-images/mine/2ec7) | Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein | Descriptor: | Gag polyprotein (Pr55Gag), ZINC ION | Authors: | Matsui, T, Kodera, Y, Tanaka, T, Endoh, H, Tanaka, H, Miyauchi, E, Komatsu, H, Kohno, T, Maeda, T. | Deposit date: | 2007-02-10 | Release date: | 2008-02-19 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7 Biochemistry, 48, 2009
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3ALN
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![BU of 3aln by Molmil](/molmil-images/mine/3aln) | Crystal Structure of human non-phosphorylated MKK4 kinase domain complexed with AMP-PNP | Descriptor: | Dual specificity mitogen-activated protein kinase kinase 4, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | Authors: | Matsumoto, T, Kinoshita, T, Kirii, Y, Yokota, K, Hamada, K, Tada, T. | Deposit date: | 2010-08-04 | Release date: | 2010-10-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures of MKK4 kinase domain reveal that substrate peptide binds to an allosteric site and induces an auto-inhibition state Biochem.Biophys.Res.Commun., 400, 2010
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3APB
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![BU of 3apb by Molmil](/molmil-images/mine/3apb) | |
3AP7
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![BU of 3ap7 by Molmil](/molmil-images/mine/3ap7) | Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose sialic acid | Descriptor: | CHLORIDE ION, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-01-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP5
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3AP6
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![BU of 3ap6 by Molmil](/molmil-images/mine/3ap6) | Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose 3'-sulfate | Descriptor: | Galectin-8, SULFATE ION, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-01-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP4
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![BU of 3ap4 by Molmil](/molmil-images/mine/3ap4) | Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose | Descriptor: | Galectin-8, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-11 | Release date: | 2011-01-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP9
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![BU of 3ap9 by Molmil](/molmil-images/mine/3ap9) | Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with Lacto-N-fucopentaose III | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Galectin-8, ... | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-02-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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