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PDB: 67 results

1W8X
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Structural analysis of PRD1
Descriptor: MAJOR CAPSID PROTEIN (PROTEIN P3), PROTEIN P16, PROTEIN P30, ...
Authors:Abrescia, N.G.A, Cockburn, J.J.B, Grimes, J.M, Sutton, G.C, Diprose, J.M, Butcher, S.J, Fuller, S.D, San Martin, C, Burnett, R.M, Stuart, D.I, Bamford, D.H, Bamford, J.K.H.
Deposit date:2004-10-01
Release date:2004-11-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Insights Into Assembly from Structural Analysis of Bacteriophage Prd1.
Nature, 432, 2004
1HB5
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quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1 P3-SHELL
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-11
Release date:2001-12-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions.
Structure, 9, 2001
1GW7
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QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Minor Proteins, Mobile Arms, and Membrane-Capsid Interactions in Bacteriophage Prd1 Capsid Assembly
Nat.Struct.Biol., 9, 2002
1HB9
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quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: BACTERIOPHAGE PRD1
Authors:San Martin, C, Burnett, R.M, De Haas, F, Heinkel, R, Rutten, T, Fuller, S.D, Butcher, S.J, Bamford, D.H.
Deposit date:2001-04-13
Release date:2001-12-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (25 Å)
Cite:Combined Em/X-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage Prd1 and Shows Key Capsid and Membrane Interactions
Structure, 9, 2001
6PT2
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Crystal structure of the active delta opioid receptor in complex with the peptide agonist KGCHM07
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHOLESTEROL, Delta opioid receptor, ...
Authors:Claff, T, Yu, J, Blais, V, Patel, N, Martin, C, Wu, L, Han, G.W, Holleran, B.J, Van der Poorten, O, Hanson, M.A, Sarret, P, Gendron, L, Cherezov, V, Katritch, V, Ballet, S, Liu, Z, Muller, C.E, Stevens, R.C.
Deposit date:2019-07-14
Release date:2019-12-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Elucidating the active delta-opioid receptor crystal structure with peptide and small-molecule agonists.
Sci Adv, 5, 2019
6PT3
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Crystal structure of the active delta opioid receptor in complex with the small molecule agonist DPI-287
Descriptor: 4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide, Delta opioid receptor
Authors:Claff, T, Yu, J, Blais, V, Patel, N, Martin, C, Wu, L, Han, G.W, Holleran, B.J, Van der Poorten, O, Hanson, M.A, Sarret, P, Gendron, L, Cherezov, V, Katritch, V, Ballet, S, Liu, Z, Muller, C.E, Stevens, R.C.
Deposit date:2019-07-14
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Elucidating the active delta-opioid receptor crystal structure with peptide and small-molecule agonists.
Sci Adv, 5, 2019
6UPA
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Crystal Structure of GTPase Domain of Human Septin 2/Septin 6 Heterocomplex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Rosa, H.V.D, Brandao-Neto, J, Martins, C, Araujo, A.P.U, Pereira, H.M, Garratt, R.C.
Deposit date:2019-10-17
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Molecular Recognition at Septin Interfaces: The Switches Hold the Key.
J.Mol.Biol., 432, 2020
4LVN
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Crystal structure of PfSUB1-prodomain-NIMP.M7 Fab complex
Descriptor: CALCIUM ION, NICKEL (II) ION, NIMP.M7 Fab heavy chain, ...
Authors:Withers-Martinez, C, Blackman, M.J.
Deposit date:2013-07-26
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The malaria parasite egress protease SUB1 is a calcium-dependent redox switch subtilisin.
Nat Commun, 5, 2014
1AGY
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The 1.15 angstrom refined structure of fusarium solani pisi cutinase
Descriptor: CUTINASE
Authors:Nicolas, A, Martinez, C, Cambillau, C.
Deposit date:1997-03-26
Release date:1998-04-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Atomic resolution (1.0 A) crystal structure of Fusarium solani cutinase: stereochemical analysis.
J.Mol.Biol., 268, 1997
4LVO
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Crystal structure of PfSUB1-prodomain-NIMP.M7 Fab complex with added CaCl2
Descriptor: CALCIUM ION, NIMP.M7 Fab heavy chain, NIMP.M7 Fab light chain, ...
Authors:Withers-Martinez, C, Blackman, M.J.
Deposit date:2013-07-26
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:The malaria parasite egress protease SUB1 is a calcium-dependent redox switch subtilisin.
Nat Commun, 5, 2014
1GPL
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RP2 LIPASE
Descriptor: CALCIUM ION, RP2 LIPASE
Authors:Withers-Martinez, C, Cambillau, C.
Deposit date:1996-07-13
Release date:1997-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A pancreatic lipase with a phospholipase A1 activity: crystal structure of a chimeric pancreatic lipase-related protein 2 from guinea pig.
Structure, 4, 1996
4AP3
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Oxidized steroid monooxygenase bound to NADP
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, STEROID MONOOXYGENASE, ...
Authors:Franceschini, S, van Beek, H.L, Martinoli, C, Pennetta, A, Fraaije, M.W, Mattevi, A.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Exploring the Structural Basis of Substrate Preferences in Baeyer-Villiger Monooxygenases: Insight from Steroid Monooxygenase.
J.Biol.Chem., 287, 2012
4D04
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Structure of the Cys65Asp mutant of phenylacetone monooxygenase: reduced state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HEXAETHYLENE GLYCOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Brondani, P.B, Dudek, H.M, Martinoli, C, Mattevi, A, Fraaije, M.W.
Deposit date:2014-04-24
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Finding the Switch: Turning a Baeyer-Villiger Monooxygenase Into a Nadph Oxidase.
J.Am.Chem.Soc., 136, 2014
4D03
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Structure of the Cys65Asp mutant of phenylacetone monooxygenase: oxidised state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HEXAETHYLENE GLYCOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Brondani, P.B, Dudek, H.M, Martinoli, C, Mattevi, A, Fraaije, M.W.
Deposit date:2014-04-24
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Finding the Switch: Turning a Baeyer-Villiger Monooxygenase Into a Nadph Oxidase.
J.Am.Chem.Soc., 136, 2014
4AOS
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BU of 4aos by Molmil
Oxidized steroid monooxygenase bound to NADP
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, STEROID MONOOXYGENASE, ...
Authors:Franceschini, S, van Beek, H.L, Martinoli, C, Fraaije, M.W, Mattevi, A.
Deposit date:2012-03-29
Release date:2012-05-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Exploring the Structural Basis of Substrate Preferences in Baeyer-Villiger Monooxygenases: Insight from Steroid Monooxygenase.
J.Biol.Chem., 287, 2012
4AP1
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Oxidized steroid monooxygenase bound to NADP
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, STEROID MONOOXYGENASE, ...
Authors:Franceschini, S, van Beek, H.L, Martinoli, C, Pennetta, A, Fraaije, M.W, Mattevi, A.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Exploring the Structural Basis of Substrate Preferences in Baeyer-Villiger Monooxygenases: Insight from Steroid Monooxygenase.
J.Biol.Chem., 287, 2012
4AOX
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Oxidized steroid monooxygenase bound to NADP
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, STEROID MONOOXYGENASE, SULFATE ION
Authors:Franceschini, S, van Beek, H.L, Martinoli, C, Fraaije, M.W, Mattevi, A.
Deposit date:2012-03-30
Release date:2012-05-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Exploring the Structural Basis of Substrate Preferences in Baeyer-Villiger Monooxygenases: Insight from Steroid Monooxygenase.
J.Biol.Chem., 287, 2012
3PT7
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Structure of HbII-III-Oxy from Lucina pectinata at pH 5.0
Descriptor: GLYCEROL, Hemoglobin II, Hemoglobin III, ...
Authors:Gavira, J.A, Ruiz-Martinez, C.R, Nieves-Marrero, C.A, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-12-02
Release date:2011-12-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:New Crystallographic Structure of HbII-III-Oxy and CN forms from Lucina pectinata.
To be Published
3PT8
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Structure of HbII-III-CN from Lucina pectinata at pH 5.0
Descriptor: CYANIDE ION, FORMIC ACID, GLYCEROL, ...
Authors:Gavira, J.A, Ruiz-Martinez, C.R, Nieves-Marrero, C.A, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-12-02
Release date:2011-12-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.762 Å)
Cite:New Crystallographic Structure of HbII-III-Oxy and CN forms from Lucina pectinata.
To be Published
3PI3
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Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 5.0
Descriptor: Hemoglobin II, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gavira, J.A, Nieves-Marrero, C.A, Ruiz-Martinez, C.R, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-11-05
Release date:2011-11-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata
To be Published
6QI5
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Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins
Descriptor: Hexon protein, PIIIa, Penton protein, ...
Authors:Condezo, G.N, Marabini, R, Gomez-Blanco, J, SanMartin, C.
Deposit date:2019-01-17
Release date:2020-08-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins.
Sci Adv, 7, 2021
3PI4
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BU of 3pi4 by Molmil
Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 4.0
Descriptor: Hemoglobin II, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gavira, J.A, Nieves-Marrero, C.A, Ruiz-Martinez, C.R, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-11-05
Release date:2011-11-09
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata
To be Published
3PI1
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Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 9.0
Descriptor: Hemoglobin II, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gavira, J.A, Nieves-Marrero, C.A, Ruiz-Martinez, C.R, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-11-05
Release date:2011-11-09
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata
To be Published
3PI2
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Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 8.0
Descriptor: FORMIC ACID, Hemoglobin II, OXYGEN MOLECULE, ...
Authors:Gavira, J.A, Nieves-Marrero, C.A, Ruiz-Martinez, C.R, Estremera-Andujar, R.A, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2010-11-05
Release date:2011-11-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata
To be Published
6MRV
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BU of 6mrv by Molmil
Sialidase26 co-crystallized with DANA
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, Sialidase26
Authors:Zaramela, L.S, Martino, C, Alisson-Silva, F, Rees, S.D, Diaz, S.L, Chuzel, L, Ganatra, M.B, Taron, C.H, Zuniga, C, Chang, G, Varki, A, Zengler, K.
Deposit date:2018-10-15
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.
Nat Microbiol, 4, 2019

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