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PDB: 41 results

1W49
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BU of 1w49 by Molmil
P4 protein from Bacteriophage PHI12 in complex with AMPcPP and Mg
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-10-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W4B
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BU of 1w4b by Molmil
P4 protein from PHI12 in complex with product (AMPcPP Mg 22C)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-11-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W48
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BU of 1w48 by Molmil
P4 protein from Bacteriophage PHI12 in complex with AMPcPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-10-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W46
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BU of 1w46 by Molmil
P4 protein from Bacteriophage PHI12 in complex with ADP and MG
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-11-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W47
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BU of 1w47 by Molmil
P4 protein from Bacteriophage PHI12 in complex with ADP and MN
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-11-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W44
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BU of 1w44 by Molmil
P4 protein from Bacteriophage PHI12 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-10-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W4A
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BU of 1w4a by Molmil
P4 protein from PHI12 in complex with AMPcPP and Mn
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MANGANESE (II) ION, NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-10-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1W4C
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BU of 1w4c by Molmil
P4 protein from Bacteriophage PHI12 apo state
Descriptor: NTPASE P4
Authors:Mancini, E.J, Kainov, D.E, Grimes, J.M, Tuma, R, Bamford, D.H, Stuart, D.I.
Deposit date:2004-07-22
Release date:2004-11-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation
Cell(Cambridge,Mass.), 118, 2004
1DYL
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BU of 1dyl by Molmil
9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY
Descriptor: NUCLEOCAPSID PROTEIN
Authors:Mancini, E.J, Clarke, M, Gowen, B.E, Rutten, T, Fuller, S.D.
Deposit date:2000-02-02
Release date:2000-08-18
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Cryo-Electron Microscopy Reveals the Functional Organization of an Enveloped Virus, Semliki Forest Virus.
Mol.Cell, 5, 2000
2V8O
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BU of 2v8o by Molmil
Structure of the Murray Valley encephalitis virus RNA helicase to 1. 9A resolution
Descriptor: FLAVIVIRIN PROTEASE NS3
Authors:Mancini, E.J, Assenberg, R, Verma, A, Walter, T.S, Tuma, R, Grimes, J.M, Owens, R.J, Stuart, D.I.
Deposit date:2007-08-09
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Murray Valley Encephalitis Virus RNA Helicase at 1.9 A Resolution.
Protein Sci., 16, 2007
5MOM
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BU of 5mom by Molmil
Crystal Structure of PCNA encoding the hypomorphic mutation S228I
Descriptor: Proliferating cell nuclear antigen
Authors:Biasutto, A.J, Mancini, E.J, Green, C.M, Wilson, R.H.C.
Deposit date:2016-12-14
Release date:2017-01-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:PCNA dependent cellular activities tolerate dramatic perturbations in PCNA client interactions.
DNA Repair (Amst.), 50, 2017
6Q3M
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BU of 6q3m by Molmil
Structure of CHD4 PHD2 - tandem chromodomains
Descriptor: 1,2-ETHANEDIOL, Chromodomain-helicase-DNA-binding protein 4, DI(HYDROXYETHYL)ETHER, ...
Authors:Alt, A, Mancini, E.J.
Deposit date:2018-12-04
Release date:2019-12-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structure of histone readers
To Be Published
2JJX
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BU of 2jjx by Molmil
THE CRYSTAL STRUCTURE OF UMP KINASE FROM BACILLUS ANTHRACIS (BA1797)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, URIDYLATE KINASE
Authors:Meier, C, Carter, L.G, Mancini, E.J, Owens, R.J, Stuart, D.I, Esnouf, R.M, Oxford Protein Production Facility (OPPF), Structural Proteomics in Europe (SPINE)
Deposit date:2008-04-23
Release date:2008-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:The Crystal Structure of Ump Kinase from Bacillus Anthracis (Ba1797) Reveals an Allosteric Nucleotide-Binding Site.
J.Mol.Biol., 381, 2008
7O56
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BU of 7o56 by Molmil
X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element solved by Phosphorus and Sulphur SAD methods
Descriptor: DNA (5'-D(P*AP*AP*TP*AP*AP*AP*AP*GP*AP*AP*AP*CP*CP*GP*AP*AP*AP*GP*TP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*AP*CP*TP*TP*TP*CP*GP*GP*TP*TP*TP*CP*TP*TP*TP*TP*AP*T)-3'), Interferon regulatory factor 4
Authors:El Omari, K, Agnarelli, A, Duman, R, Wagner, A, Mancini, E.J.
Deposit date:2021-04-07
Release date:2021-05-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Phosphorus and sulfur SAD phasing of the nucleic acid-bound DNA-binding domain of interferon regulatory factor 4.
Acta Crystallogr.,Sect.F, 77, 2021
9F5B
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BU of 9f5b by Molmil
Identification of zinc ions in LMO4.
Descriptor: LIM domain transcription factor LMO4,LIM domain-binding protein 1, ZINC ION
Authors:El Omari, K, Forsyth, I, Mancini, E.J, Wagner, A.
Deposit date:2024-04-28
Release date:2024-10-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Utilizing anomalous signals for element identification in macromolecular crystallography.
Acta Crystallogr D Struct Biol, 80, 2024
6GUW
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BU of 6guw by Molmil
BTB domain of zebrafish PATZ1
Descriptor: POZ (BTB) and AT hook-containing zinc finger 1
Authors:Alt, A, Piepoli, S, Erman, B, Mancini, E.J.
Deposit date:2018-06-19
Release date:2019-10-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the PATZ1 BTB domain homodimer
Acta Crystallogr.,Sect.D, 2020
6GUU
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BU of 6guu by Molmil
Structure of CHD5 PHD2 - tandem chromodomains
Descriptor: Chromodomain-helicase-DNA-binding protein 5, ZINC ION
Authors:Alt, A, Mancini, E.J.
Deposit date:2018-06-19
Release date:2019-10-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of CHD5 PHD2 - tandem chromodomains
To Be Published
6GUV
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BU of 6guv by Molmil
BTB domain of mouse PATZ1
Descriptor: POZ (BTB) and AT hook-containing zinc finger 1
Authors:Alt, A, Piepoli, S, Erman, B, Mancini, E.J.
Deposit date:2018-06-19
Release date:2019-10-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural analysis of the PATZ1 BTB domain homodimer
Acta Crystallogr.,Sect.D, 2020
7OGS
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BU of 7ogs by Molmil
X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element
Descriptor: DNA (5'-D(P*AP*TP*AP*AP*CP*TP*GP*AP*AP*AP*CP*CP*GP*AP*AP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*TP*GP*TP*AP*CP*TP*TP*TP*CP*GP*GP*TP*TP*TP*CP*AP*GP*TP*TP*A)-3'), Interferon regulatory factor 4
Authors:Agnarelli, A, El Omari, K, Alt, A.O, Mancini, E.J.
Deposit date:2021-05-07
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to interferon-stimulated response element
To Be Published
7OOT
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BU of 7oot by Molmil
X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to an interferon-stimulated response element
Descriptor: DNA (5'-D(P*AP*GP*CP*TP*TP*TP*CP*TP*CP*GP*GP*TP*TP*TP*CP*AP*GP*TP*TP*G)-3'), DNA (5'-D(P*TP*CP*AP*AP*CP*TP*GP*AP*AP*AP*CP*CP*GP*AP*GP*AP*AP*AP*GP*C)-3'), Interferon regulatory factor 4, ...
Authors:Agnarelli, A, El Omari, K, Alt, A.O, Mancini, E.J.
Deposit date:2021-05-28
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:X-ray Structure of Interferon Regulatory Factor 4 DNA binding domain bound to interferon-stimulated response element
To Be Published
2YPB
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BU of 2ypb by Molmil
Structure of the SCL:E47 complex bound to DNA
Descriptor: EBOX FORWARD, EBOX REVERSE, T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1, ...
Authors:El Omari, K, Hoosdally, S.J, Tuladhar, K, Karia, D, Ponsele, E, Platonova, O, Vyas, P, Patient, R, Porcher, C, Mancini, E.J.
Deposit date:2012-10-30
Release date:2013-07-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Structural Basis for Lmo2-Driven Recruitment of the Scl:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets.
Cell Rep., 4, 2013
2XJY
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BU of 2xjy by Molmil
Crystal structure of the LMO2:LDB1-LID complex, P21 crystal form
Descriptor: LIM DOMAIN-BINDING PROTEIN 1, RHOMBOTIN-2, ZINC ION
Authors:El Omari, K, Karia, D, Porcher, C, Mancini, E.J.
Deposit date:2010-07-06
Release date:2010-07-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Leukemia Oncogene Lmo2: Implications for the Assembly of a Hematopoietic Transcription Factor Complex.
Blood, 117, 2011
2XJZ
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BU of 2xjz by Molmil
Crystal structure of the LMO2:LDB1-LID complex, C2 crystal form
Descriptor: CHLORIDE ION, LIM DOMAIN-BINDING PROTEIN 1, RHOMBOTIN-2, ...
Authors:El Omari, K, Karia, D, Porcher, C, Mancini, E.J.
Deposit date:2010-07-06
Release date:2010-07-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the Leukemia Oncogene Lmo2: Implications for the Assembly of a Hematopoietic Transcription Factor Complex.
Blood, 117, 2011
2YPA
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BU of 2ypa by Molmil
Structure of the SCL:E47:LMO2:LDB1 complex bound to DNA
Descriptor: EBOX FORWARD, EBOX REVERSE, LIM DOMAIN-BINDING PROTEIN 1, ...
Authors:El Omari, K, Hoosdally, S.J, Tuladhar, K, Karia, D, Ponsele, E, Platonova, O, Vyas, P, Patient, R, Porcher, C, Mancini, E.J.
Deposit date:2012-10-30
Release date:2013-07-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Lmo2-Driven Recruitment of the Scl:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets.
Cell Rep., 4, 2013
4BLO
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BU of 4blo by Molmil
P4 PROTEIN FROM BACTERIOPHAGE PHI6 IN COMPLEX WITH ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, PACKAGING ENZYME P4
Authors:El Omari, K, Meier, C, Kainov, D, Sutton, G, Grimes, J.M, Poranen, M.M, Bamford, D.H, Tuma, R, Stuart, D.I, Mancini, E.J.
Deposit date:2013-05-04
Release date:2013-08-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Tracking in Atomic Detail the Functional Specializations in Viral Reca Helicases that Occur During Evolution.
Nucleic Acids Res., 41, 2013

 

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