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PDB: 51964 results

7RBR
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BU of 7rbr by Molmil
The crystal structure of Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with a Lys48-linked di-ubiquitin
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Papain-like protease, ...
Authors:Osipiuk, J, Tesar, C, Endres, M, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-07-06
Release date:2021-09-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
4IN9
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BU of 4in9 by Molmil
Structure of karilysin MMP-like catalytic domain in complex with inhibitory tetrapeptide SWFP
Descriptor: GLYCEROL, Karilysin protease, POTASSIUM ION, ...
Authors:Guevara, T, Ksiazek, M, Skottrup, P.D, Cerda-Costa, N, Trillo-Muyo, S, de Diego, I, Riise, E, Potempa, J, Gomis-Ruth, F.X.
Deposit date:2013-01-04
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of the catalytic domain of the Tannerella forsythia matrix metallopeptidase karilysin in complex with a tetrapeptidic inhibitor.
Acta Crystallogr.,Sect.F, 69, 2013
5H7K
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BU of 5h7k by Molmil
Crystal structure of Elongation factor 2 GDP-form
Descriptor: Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE
Authors:Tanzawa, T, Kato, K, Uchiumi, T, Yao, M.
Deposit date:2016-11-18
Release date:2018-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion
Nucleic Acids Res., 46, 2018
5HY4
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BU of 5hy4 by Molmil
Structure-function analysis of functionally diverse members of the cyclic amide hydrolase family of Toblerone fold enzymes
Descriptor: Ring-opening amidohydrolase
Authors:Peat, T.S, Balotra, S, Wilding, M, Newman, J, Scott, C.
Deposit date:2016-02-01
Release date:2017-02-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes.
Appl. Environ. Microbiol., 83, 2017
4IOU
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BU of 4iou by Molmil
Crystal structure of the HIV-1 Vif binding, catalytically active domain of APOBEC3F
Descriptor: DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION
Authors:Bohn, M, Shandilya, S.M.D, Schiffer, C.A.
Deposit date:2013-01-08
Release date:2013-05-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain.
Structure, 21, 2013
8OPH
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BU of 8oph by Molmil
Head-to-tail double ring assembly from truncated PVY coat protein
Descriptor: Genome polyprotein
Authors:Kavcic, L, Kezar, A, Podobnik, M.
Deposit date:2023-04-07
Release date:2024-01-24
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y.
Commun Chem, 7, 2024
5HZH
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BU of 5hzh by Molmil
Crystal structure of photoinhibitable Rac1 containing C450A mutant LOV2 domain
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Tarnawski, M, Dagliyan, O, Chu, P.H, Shirvanyants, D, Dokholyan, N.V, Hahn, K.M, Schlichting, I.
Deposit date:2016-02-02
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineering extrinsic disorder to control protein activity in living cells.
Science, 354, 2016
6XX7
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BU of 6xx7 by Molmil
Arabidopsis thaliana Casein Kinase 2 (CK2) alpha-1 crystal in complex with ANP
Descriptor: CHLORIDE ION, Casein kinase II subunit alpha-1, MAGNESIUM ION, ...
Authors:Demulder, M, De Veylder, L, Loris, R.
Deposit date:2020-01-27
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of Arabidopsis thaliana casein kinase 2 alpha 1.
Acta Crystallogr.,Sect.F, 76, 2020
5H92
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BU of 5h92 by Molmil
Crystal structure of the complex between maize Sulfite Reductase and ferredoxin in the form-3 crystal
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic, ...
Authors:Kurisu, G, Nakayama, M, Hase, T.
Deposit date:2015-12-25
Release date:2016-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and mutational studies of an electron transfer complex of maize sulfite reductase and ferredoxin.
J.Biochem., 160, 2016
6FHK
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BU of 6fhk by Molmil
Structure of a modified protein containing a genetically encoded phosphoserine
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock 70 kDa protein 1A, MAGNESIUM ION, ...
Authors:Mukherjee, M, Bayliss, R.
Deposit date:2018-01-14
Release date:2018-10-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.657 Å)
Cite:Mitotic phosphorylation regulates Hsp72 spindle localization by uncoupling ATP binding from substrate release.
Sci Signal, 11, 2018
5I5N
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BU of 5i5n by Molmil
Crystal Structure of N-terminal Domain of Matrix Protein of Thogoto Virus at Acidic pH.
Descriptor: Matrix protein
Authors:Liu, Y, Liang, H, Yang, M.
Deposit date:2016-02-15
Release date:2016-08-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:pH-dependent conformational changes of a Thogoto virus matrix protein reveal mechanisms of viral assembly and uncoating
J.Gen.Virol., 97, 2016
8OZ0
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BU of 8oz0 by Molmil
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Fraser, C.S, Ramakrishnan, V.
Deposit date:2023-05-06
Release date:2024-02-07
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The structure of a human translation initiation complex reveals two independent roles for the helicase eIF4A.
Nat.Struct.Mol.Biol., 31, 2024
8OGD
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BU of 8ogd by Molmil
Structure of zinc(II) double mutant human carbonic anhydrase II bound to thiocyanate
Descriptor: 4-(HYDROXYMERCURY)BENZOIC ACID, Carbonic anhydrase 2, THIOCYANATE ION, ...
Authors:Silva, J.M, Cerofolini, L, Carvalho, A.L, Ravera, E, Fragai, M, Parigi, G, Macedo, A.L, Geraldes, C.F.G.C, Luchinat, C.
Deposit date:2023-03-20
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Elucidating the concentration-dependent effects of thiocyanate binding to carbonic anhydrase.
J.Inorg.Biochem., 244, 2023
8ON8
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BU of 8on8 by Molmil
Apo Malacoceros FaNaC1 in lipid nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide-gated sodium channel 1
Authors:Kalienkova, V, Dandamudi, M, Paulino, C, Lynagh, T.
Deposit date:2023-04-01
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for excitatory neuropeptide signaling.
Nat.Struct.Mol.Biol., 31, 2024
8ON9
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ASSFVRIa-bound Malacoceros FaNaC1 in lipid nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ASSFVRIamide, ...
Authors:Kalienkova, V, Dandamudi, M, Paulino, C, Lynagh, T.
Deposit date:2023-04-01
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural basis for excitatory neuropeptide signaling.
Nat.Struct.Mol.Biol., 31, 2024
5HLT
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BU of 5hlt by Molmil
Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain
Descriptor: DNA (5'-D(*GP*YPY*TP*AP*CP*CP*CP*GP*TP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP*YPY*C)-3'), Restriction endonuclease R.BpuJI
Authors:Probst, M, Aeschimann, W, Chau, T.-T.-H, Langenegger, S.M, Stocker, A, Haener, R.
Deposit date:2016-01-15
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.672 Å)
Cite:Structural insight into DNA-assembled oligochromophores: crystallographic analysis of pyrene- and phenanthrene-modified DNA in complex with BpuJI endonuclease.
Nucleic Acids Res., 44, 2016
7RRO
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BU of 7rro by Molmil
Structure of the 48-nm repeat doublet microtubule from bovine tracheal cilia
Descriptor: Armadillo repeat containing 4, Chromosome 3 C1orf194 homolog, Cilia and flagella associated protein 161, ...
Authors:Gui, M, Anderson, J.R, Botsch, J.J, Meleppattu, S, Singh, S.K, Zhang, Q, Brown, A.
Deposit date:2021-08-10
Release date:2021-10-27
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:De novo identification of mammalian ciliary motility proteins using cryo-EM.
Cell, 184, 2021
8ON7
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BU of 8on7 by Molmil
FMRFa-bound Malacoceros FaNaC1 in lipid nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide, ...
Authors:Kalienkova, V, Dandamudi, M, Paulino, C, Lynagh, T.
Deposit date:2023-04-01
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for excitatory neuropeptide signaling.
Nat.Struct.Mol.Biol., 31, 2024
8ONX
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BU of 8onx by Molmil
High resolution structure of Chaetomium thermophilum MAP2
Descriptor: MANGANESE (II) ION, Methionine aminopeptidase 2
Authors:Klein, M.A, Wild, K, Kisonaite, M, Sinning, I.
Deposit date:2023-04-04
Release date:2024-02-14
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome.
Nat Commun, 15, 2024
8ONY
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BU of 8ony by Molmil
Human Methionine Aminopeptidase 2 at the 80S ribosome
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L19, ...
Authors:Klein, M.A, Wild, K, Kisonaite, M, Sinning, I.
Deposit date:2023-04-04
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome.
Nat Commun, 15, 2024
8ONA
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BU of 8ona by Molmil
FMRFa-bound Malacoceros FaNaC1 in lipid nanodiscs in presence of diminazene
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide, neuropeptide, ...
Authors:Kalienkova, V, Dandamudi, M, Paulino, C, Lynagh, T.
Deposit date:2023-04-01
Release date:2024-02-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for excitatory neuropeptide signaling.
Nat.Struct.Mol.Biol., 31, 2024
6XVR
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BU of 6xvr by Molmil
Human myelin protein P2 mutant L35S
Descriptor: Myelin P2 protein, PALMITIC ACID, SULFATE ION
Authors:Ruskamo, S, Lehtimaki, M, Kursula, P.
Deposit date:2020-01-22
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice.
J.Biol.Chem., 295, 2020
8OPB
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BU of 8opb by Molmil
Virus-like Particle based on PVY coat protein with RNA-free helical architecture
Descriptor: Genome polyprotein (Fragment)
Authors:Kavcic, L, Kezar, A, Podobnik, M.
Deposit date:2023-04-07
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y.
Commun Chem, 7, 2024
1I2S
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BU of 1i2s by Molmil
BETA-LACTAMASE FROM BACILLUS LICHENIFORMIS BS3
Descriptor: BETA-LACTAMASE, CITRIC ACID, SODIUM ION
Authors:Fonze, E, Vanhove, M, Dive, G, Sauvage, E, Frere, J.M, Charlier, P.
Deposit date:2001-02-12
Release date:2002-03-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the Bacillus licheniformis BS3 class A beta-lactamase and of the acyl-enzyme adduct formed with cefoxitin
Biochemistry, 41, 2002
2XYR
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BU of 2xyr by Molmil
Crystal structure of the nsp16 nsp10 SARS coronavirus complex
Descriptor: CHLORIDE ION, MAGNESIUM ION, NON-STRUCTURAL PROTEIN 10, ...
Authors:Decroly, E, Debarnot, C, Ferron, F, Bouvet, M, Coutard, B, Imbert, I, Gluais, L, Papageorgiou, N, Ortiz-Lombardia, M, Lescar, J, Canard, B.
Deposit date:2010-11-18
Release date:2011-10-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure and Functional Analysis of the Sars-Coronavirus RNA CAP 2'-O-Methyltransferase Nsp10/Nsp16 Complex.
Plos Pathog., 7, 2011

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