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PDB: 51964 results

6PBF
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BU of 6pbf by Molmil
ZINC9155420-bound TRPV5 in nanodiscs
Descriptor: (1S)-1-(4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)ethyl [(2S)-3-oxo-3,4-dihydro-2H-1,4-benzothiazin-2-yl]acetate, Transient receptor potential cation channel subfamily V member 5
Authors:Hughes, T.E.T, Rosario, J.S.D, Kapoor, A, Yazici, A.T, Fluck, E.C, Filizola, M, Rohacs, T, Moiseenkova-Bell, V.Y.
Deposit date:2019-06-13
Release date:2019-11-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure-based characterization of novel TRPV5 inhibitors.
Elife, 8, 2019
1IA3
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BU of 1ia3 by Molmil
Candida albicans dihydrofolate reductase complex in which the dihydronicotinamide moiety of dihydro-nicotinamide-adenine-dinucleotide phosphate (NADPH) is displaced by 5-[(4-TERT-BUTYLPHENYL)SULFANYL]-2,4-QUINAZOLINEDIAMINE (GW995)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-[4-TERT-BUTYLPHENYLSULFANYL]-2,4-QUINAZOLINEDIAMINE, DIHYDROFOLATE REDUCTASE, ...
Authors:Whitlow, M, Howard, A.J, Kuyper, L.F.
Deposit date:2001-03-22
Release date:2001-04-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:X-ray Crystal Structures of Candida albicans Dihydrofolate Reductase: High Resolution Ternary Complexes in Which the Dihydronicotinamide Moiety of NADPH is Displaced by an inhibitor
J.Med.Chem., 44, 2001
2KZY
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BU of 2kzy by Molmil
Solution NMR structure of the ZNF216 A20 zinc finger
Descriptor: ZINC ION, Zfand5 protein (Zinc finger protein 216 (Predicted), isoform CRA_a)
Authors:Garner, T.P, Long, J.E, Searle, M.S, Layfield, R.
Deposit date:2010-06-28
Release date:2011-07-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Co-localisation of ubiquitin receptors ZNF216 and p62 in a ubiquitin-mediated ternary complex
To be Published
5ZVR
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BU of 5zvr by Molmil
Crystal structure of R274A mutant of phosphomannose isomerase from Salmonella typhimurium
Descriptor: 1,2-ETHANEDIOL, Mannose-6-phosphate isomerase, ZINC ION
Authors:Bangera, M, Murthy, M.R.N.
Deposit date:2018-05-12
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural and functional insights into phosphomannose isomerase: the role of zinc and catalytic residues.
Acta Crystallogr D Struct Biol, 75, 2019
7LDY
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BU of 7ldy by Molmil
HIV-1 Protease WT (NL4-3) in Complex with TMC-126
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL]CARBAMATE, Protease, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2021-01-14
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.984 Å)
Cite:HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues
To Be Published
5ZWE
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BU of 5zwe by Molmil
Covalent bond formation between histidine of Vitamin D receptor (VDR) and a full agonist having a vinyl ketone group via conjugate addition reaction
Descriptor: (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one, 13-meric peptide from DRIP205 NR2 BOX peptide, Vitamin D3 receptor
Authors:Yoshizawa, M, Itoh, T, Anami, Y, Kato, A, Yoshimoto, N, Yamamoto, K.
Deposit date:2018-05-15
Release date:2018-07-18
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
6PEW
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BU of 6pew by Molmil
CryoEM Plasmodium falciparum glutamine synthetase
Descriptor: Glutamine synthetase
Authors:Ho, C.M, Lai, M, Zhou, Z.H.
Deposit date:2019-06-21
Release date:2019-12-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu.
Nat.Methods, 17, 2020
7LE1
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BU of 7le1 by Molmil
HIV-1 Protease WT (NL4-3) in Complex with UMass2
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl][(2S)-2-methylbutyl]amino}propyl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2021-01-14
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues
To Be Published
6PFX
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BU of 6pfx by Molmil
D-alanyl transferase DltD from Enterococcus faecium
Descriptor: D-alanyl transferase DltD, GLYCEROL
Authors:Shakhashiro, M, Korotkov, K.V.
Deposit date:2019-06-22
Release date:2019-07-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:D-alanyl transferase DltD from Enterococcus faecium
To Be Published
7LE0
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BU of 7le0 by Molmil
HIV-1 Protease WT (NL4-3) in Complex with a Darunavir Derivative
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{[(1,3-benzothiazol-6-yl)sulfonyl](2-methylpropyl)amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2021-01-14
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues
To Be Published
6AB9
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BU of 6ab9 by Molmil
The crystal structure of the relaxed state of Nonlabens marinus Rhodopsin 3
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y.
Deposit date:2018-07-20
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The pumping mechanism of NM-R3, a light-driven cyanobacterial chloride importer in the rhodopsin family
To Be Published
7LE2
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BU of 7le2 by Molmil
HIV-1 Protease WT (NL4-3) in Complex with UMass4
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{(1,3-benzodioxol-5-ylsulfonyl)[(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2021-01-14
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.971 Å)
Cite:HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues
To Be Published
6ABM
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BU of 6abm by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys
Descriptor: (2S)-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Yanagisawa, T, Kuratani, M, Yokoyama, S.
Deposit date:2018-07-22
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.368 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
7LDZ
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BU of 7ldz by Molmil
HIV-1 Protease WT (NL4-3) in Complex with GRL-98065
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE, Protease, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2021-01-14
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues
To Be Published
6XWZ
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BU of 6xwz by Molmil
Carbonic Anhydrase II-mediated hydrolysis of selenolester
Descriptor: GLYCEROL, ZINC ION, benzeneselenol, ...
Authors:Angeli, A, Feraroni, M.
Deposit date:2020-01-24
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Selenolesterase enzyme activity of carbonic anhydrases
Chem.Commun.(Camb.), 2020
6XX6
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BU of 6xx6 by Molmil
Arabidopsis thaliana Casein Kinase 2 (CK2) alpha-1 crystal form I
Descriptor: CHLORIDE ION, Casein kinase II subunit alpha-1, PIVALIC ACID, ...
Authors:Demulder, M, De Veylder, L, Loris, R.
Deposit date:2020-01-27
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.84919691 Å)
Cite:Crystal structure of Arabidopsis thaliana casein kinase 2 alpha 1.
Acta Crystallogr.,Sect.F, 76, 2020
6XX8
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BU of 6xx8 by Molmil
Arabidopsis thaliana Casein Kinase 2 (CK2) alpha-1 crystal form II
Descriptor: Casein kinase II subunit alpha-1
Authors:Demulder, M, De Veylder, L, Loris, R.
Deposit date:2020-01-27
Release date:2020-04-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Arabidopsis thaliana casein kinase 2 alpha 1.
Acta Crystallogr.,Sect.F, 76, 2020
6ADE
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BU of 6ade by Molmil
Crystal structure of phosphorylated mutant of glyceraldehyde 3-phosphate dehydrogenase from human placenta at 3.15A resolution
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Dilawari, R, Singh, P.K, Raje, M, Sharma, S, Singh, T.P.
Deposit date:2018-07-31
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Crystal structure of phosphorylated mutant of glyceraldehyde 3-phosphate dehydrogenase from human placenta at 3.15A resolution
To Be Published
5ZYP
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BU of 5zyp by Molmil
Structure of the Yeast Ctr9/Paf1 complex
Descriptor: NICKEL (II) ION, RNA polymerase-associated protein CTR9,RNA polymerase II-associated protein 1
Authors:Xie, Y, Zheng, M, Zhou, H, Long, J.
Deposit date:2018-05-28
Release date:2018-09-26
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.532 Å)
Cite:Paf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation.
Nat Commun, 9, 2018
5TNY
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BU of 5tny by Molmil
HTRA2 G399S mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Serine protease HTRA2, mitochondrial
Authors:Merski, M, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
Deposit date:2016-10-15
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular motion regulates the activity of the Mitochondrial Serine Protease HtrA2.
Cell Death Dis, 8, 2017
5ZZ9
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BU of 5zz9 by Molmil
Crystal structure of Homer2 EVH1/Drebrin PPXXF complex
Descriptor: Homer protein homolog 2, Peptide from Drebrin
Authors:Li, Z, Liu, H, Li, J, Liu, W, Zhang, M.
Deposit date:2018-05-31
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Homer Tetramer Promotes Actin Bundling Activity of Drebrin.
Structure, 27, 2019
7LIE
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BU of 7lie by Molmil
The isolated chicken ASIC1a thumb domain (ATD-c1a) retains the structure and ligand binding properties of the full length chicken ASIC1a
Descriptor: Acid-sensing ion channel 1
Authors:Mishra, B.M, Mobli, M.
Deposit date:2021-01-27
Release date:2022-08-10
Method:SOLUTION NMR
Cite:A reductionist approach for studying the ASIC thumb domain to screen for channel modulators as novel therapeutic leads
To Be Published
6XXY
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BU of 6xxy by Molmil
Crystal structure of Haemophilus influenzae 3-isopropylmalate dehydrogenase in complex with O-isobutenyl oxalylhydroxamate.
Descriptor: 2-(2-methylprop-2-enoxyamino)-2-oxidanylidene-ethanoic acid, 3-isopropylmalate dehydrogenase, MAGNESIUM ION, ...
Authors:Miggiano, R, Rossi, F, Martignon, S, Rizzi, M.
Deposit date:2020-01-28
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of Haemophilus influenzae 3-isopropylmalate dehydrogenase (LeuB) in complex with the inhibitor O-isobutenyl oxalylhydroxamate.
Biochem.Biophys.Res.Commun., 524, 2020
6PJK
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BU of 6pjk by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR3-29
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,4S,5S)-4-hydroxy-5-{[N-(methoxycarbonyl)-L-isoleucyl]amino}-1,6-diphenylhexan-2-yl]carbamate, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
3EL8
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BU of 3el8 by Molmil
Crystal structure of c-Src in complex with pyrazolopyrimidine 5
Descriptor: 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea, Proto-oncogene tyrosine-protein kinase Src
Authors:Dar, A.C, Lopez, M.S, Shokat, K.M.
Deposit date:2008-09-20
Release date:2008-10-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Small molecule recognition of c-Src via the Imatinib-binding conformation.
Chem.Biol., 15, 2008

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數據於2024-10-09公開中

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