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PDB: 51964 results

6E6Q
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1.20 A resolution structure of the C-terminally truncated [2Fe-2S] ferredoxin (Bfd) from Pseudomonas aeruginosa
Descriptor: Bacterioferritin-associated ferredoxin, FE2/S2 (INORGANIC) CLUSTER
Authors:Lovell, S, Wijerathne, H, Battaile, K.P, Yao, H, Wang, Y, Rivera, M.
Deposit date:2018-07-25
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Bfd, a New Class of [2Fe-2S] Protein That Functions in Bacterial Iron Homeostasis, Requires a Structural Anion Binding Site.
Biochemistry, 57, 2018
4O3R
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Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-da pair
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*A)-3'), DNA (5'-D(*CP*AP*TP*GP*(8OG)P*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Patra, A, Egli, M.
Deposit date:2013-12-18
Release date:2014-04-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta
J.Biol.Chem., 289, 2014
6RWH
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Fragment AZ-007 binding at a primary and secondary binding site of the the p53pT387/14-3-3 sigma complex
Descriptor: 14-3-3 protein sigma, 5-(1~{H}-imidazol-5-yl)-4-phenyl-thiophene-2-carboximidamide, CALCIUM ION, ...
Authors:Leysen, S, Guillory, X, Wolter, M, Genet, S, Somsen, B, Patel, J, Castaldi, P, Ottmann, C.
Deposit date:2019-06-05
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Fragment-based Differential Targeting of PPI Stabilizer Interfaces.
J.Med.Chem., 63, 2020
3E5I
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BU of 3e5i by Molmil
Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser off
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Tomita, A, Sato, T, Ichiyanagi, K, Nozawa, S, Ichikawa, H, Chollet, M, Kawai, F, Park, S.-Y, Koshihara, S, Adachi, S.
Deposit date:2008-08-14
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin
Proc.Natl.Acad.Sci.USA, 106, 2009
4O4I
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BU of 4o4i by Molmil
Tubulin-Laulimalide-Epothilone A complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, EPOTHILONE A, ...
Authors:Prota, A.E, Bargsten, K, Northcote, P.T, Marsh, M, Altmann, K.H, Miller, J.H, Diaz, J.F, Steinmetz, M.O.
Deposit date:2013-12-18
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of microtubule stabilization by laulimalide and peloruside a.
Angew.Chem.Int.Ed.Engl., 53, 2014
4I66
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BU of 4i66 by Molmil
Crystal structure of Hoch_4089 protein from Haliangium ochraceum
Descriptor: SULFATE ION, uncharacterized protein Hoch_4089
Authors:Michalska, K, Mack, J.C, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-11-29
Release date:2013-02-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of Hoch_4089 protein from Haliangium ochraceum
To be Published
6E85
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1.25 Angstrom Resolution Crystal Structure of 4-hydroxythreonine-4-phosphate Dehydrogenase from Klebsiella pneumoniae.
Descriptor: CHLORIDE ION, D-threonate 4-phosphate dehydrogenase, FORMIC ACID, ...
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Kiryukhina, O, Endres, M, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-07-27
Release date:2018-08-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.
Microbiol Resour Announc, 12, 2023
6IWG
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BU of 6iwg by Molmil
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with N-myristoylated 4-mer lipopeptide derived from SIV nef protein
Descriptor: 1,2-ETHANEDIOL, BORIC ACID, Beta-2-microglobulin, ...
Authors:Yamamoto, Y, Morita, D, Sugita, M.
Deposit date:2018-12-05
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification and Structure of an MHC Class I-Encoded Protein with the Potential to PresentN-Myristoylated 4-mer Peptides to T Cells.
J Immunol., 202, 2019
3P2N
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BU of 3p2n by Molmil
Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that was annotated as 'hypothetical protein'
Descriptor: 3,6-anhydro-alpha-L-galactosidase, CHLORIDE ION, ZINC ION
Authors:Rebuffet, E, Barbeyron, T, Czjzek, M, Michel, G.
Deposit date:2010-10-03
Release date:2011-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery and structural characterization of a novel glycosidase family of marine origin.
Environ Microbiol, 13, 2011
1J1J
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BU of 1j1j by Molmil
Crystal Structure of human Translin
Descriptor: Translin
Authors:Sugiura, I, Sasaki, C, Hasegawa, T, Kohno, T, Sugio, S, Moriyama, H, Kasai, M, Matsuzaki, T.
Deposit date:2002-12-06
Release date:2003-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human translin at 2.2 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
3EBB
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BU of 3ebb by Molmil
PLAP/P97 complex
Descriptor: MAGNESIUM ION, PHOSPHOLIPASE A2-ACTIVATING PROTEIN, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATP
Authors:Walker, J.R, Qiu, L, Akutsu, M, Slessarev, Y, Amaya, M.F, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-08-27
Release date:2009-02-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and function of the PLAA/Ufd3-p97/Cdc48 complex.
J.Biol.Chem., 285, 2010
4O3N
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BU of 4o3n by Molmil
Crystal structure of human dna polymerase eta in ternary complex with native dna and incoming nucleotide (dcp)
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Patra, A, Egli, M.
Deposit date:2013-12-18
Release date:2014-04-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.579 Å)
Cite:Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta
J.Biol.Chem., 289, 2014
4I6Z
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BU of 4i6z by Molmil
Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
Descriptor: DNA OLIGONUCLEOTIDE, Transcriptional regulator, TetR family
Authors:Koclega, K.D, Chruszcz, M, Cooper, D.R, Petkowski, J.J, Tkaczuk, K.L, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-11-30
Release date:2013-01-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
To be Published
6E8Q
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BU of 6e8q by Molmil
S. CEREVISIAE CYP51 COMPLEXED WITH Posaconazole
Descriptor: DODECYL-BETA-D-MALTOSIDE, Lanosterol 14-alpha demethylase, PENTAETHYLENE GLYCOL, ...
Authors:Tyndall, J.D, Keniya, M.V, Sabherwal, M, Monk, B.C.
Deposit date:2018-07-30
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Azole Resistance Reduces Susceptibility to the Tetrazole Antifungal VT-1161.
Antimicrob. Agents Chemother., 63, 2019
4I7B
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BU of 4i7b by Molmil
Siah1 bound to synthetic peptide (ACE)KLRPV(ABA)MVRPTVR
Descriptor: E3 ubiquitin-protein ligase SIAH1, Protein phyllopod, ZINC ION
Authors:Santelli, E, Stebbins, J.L, Feng, Y, De, S.K, Purves, A, Motamedchaboki, K, Wu, B, Ronai, Z.A, Liddington, R.C, Pellecchia, M.
Deposit date:2012-11-30
Release date:2013-08-14
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based design of covalent siah inhibitors.
Chem.Biol., 20, 2013
4I7N
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BU of 4i7n by Molmil
T4 Lysozyme L99A/M102H with 1-phenyl-2-propyn-1-ol bound
Descriptor: (1R)-1-phenylprop-2-yn-1-ol, 2-HYDROXYETHYL DISULFIDE, ACETATE ION, ...
Authors:Merski, M, Shoichet, B.K.
Deposit date:2012-11-30
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The impact of introducing a histidine into an apolar cavity site on docking and ligand recognition.
J.Med.Chem., 56, 2013
3OV2
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BU of 3ov2 by Molmil
Curcumin synthase 1 from Curcuma longa
Descriptor: 1,2-ETHANEDIOL, Curcumin synthase, MALONATE ION
Authors:Katsuyama, Y, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
Deposit date:2010-09-15
Release date:2010-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A hydrophobic cavity discovered in a curcumin synthase facilitates utilization of a beta-keto acid as an extender substrate for the atypical type III polyleteide synthase
To be Published
6S7S
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BU of 6s7s by Molmil
Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator N-(2-Methoxy-5-(N-phenylsulfamoyl)phenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide
Descriptor: FORMIC ACID, Fumarate hydratase class II, ~{N}-[2-methoxy-5-(phenylsulfamoyl)phenyl]-2-(4-oxidanylidene-3~{H}-phthalazin-1-yl)ethanamide
Authors:Whitehouse, A.J, Libardo, M.D, Kasbekar, M, Brear, P, Fischer, G, Thomas, C.J, Barry, C.E, Boshoff, H.I, Coyne, A.G, Abell, C.
Deposit date:2019-07-05
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Targeting of Fumarate Hydratase fromMycobacterium tuberculosisUsing Allosteric Inhibitors with a Dimeric-Binding Mode.
J.Med.Chem., 62, 2019
4NVI
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BU of 4nvi by Molmil
Predicting protein conformational response in prospective ligand discovery.
Descriptor: 3-bromoquinolin-4-amine, Cytochrome c peroxidase, PHOSPHATE ION, ...
Authors:Fischer, M, Fraser, J.S.
Deposit date:2013-12-05
Release date:2013-12-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery.
Nat Chem, 6, 2014
6ITB
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BU of 6itb by Molmil
Icosahedral asymmetric unit (iASU) model of the well-refined part of FHV eluted particle
Descriptor: CAPSID PROTEIN BETA
Authors:Banerjee, M, Azad, K.
Deposit date:2018-11-20
Release date:2019-08-28
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural Dynamics of Nonenveloped Virus Disassembly Intermediates.
J.Virol., 93, 2019
4O5Y
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BU of 4o5y by Molmil
O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION
Authors:Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
Deposit date:2013-12-20
Release date:2014-07-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
6RK3
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BU of 6rk3 by Molmil
Solution structure of the ribosome Elongation Factor P (EF-P) from Staphylococcus aureus
Descriptor: Elongation factor P
Authors:Usachev, K, Fatkhullin, B, Gabdulkhakov, A, Khusainov, I, Golubev, A, Validov, S, Yusupova, G, Yusupov, M.
Deposit date:2019-04-30
Release date:2020-03-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR and crystallographic structural studies of the Elongation factor P from Staphylococcus aureus.
Eur.Biophys.J., 49, 2020
3P5T
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BU of 3p5t by Molmil
CFIm25-CFIm68 complex
Descriptor: Cleavage and polyadenylation specificity factor subunit 5, Cleavage and polyadenylation specificity factor subunit 6
Authors:Li, H, Tong, S, Li, X, Shi, H, Gao, Y, Ge, H, Niu, L, Teng, M.
Deposit date:2010-10-11
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of pre-mRNA recognition by the human cleavage factor Im complex
To be Published
4I2H
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BU of 4i2h by Molmil
Ternary complex of mouse TdT with ssDNA and AMPcPP
Descriptor: 5'-D(P*AP*AP*AP*AP*A)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-11-21
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
1J7N
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BU of 1j7n by Molmil
Anthrax Toxin Lethal factor
Descriptor: Lethal Factor precursor, SULFATE ION, ZINC ION
Authors:Pannifer, A.D, Wong, T.Y, Schwarzenbacher, R, Renatus, M, Petosa, C, Collier, R.J, Bienkowska, J, Lacy, D.B, Park, S, Leppla, S.H, Hanna, P, Liddington, R.C.
Deposit date:2001-05-17
Release date:2001-11-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the anthrax lethal factor.
Nature, 414, 2001

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