Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

1BWU
DownloadVisualize
BU of 1bwu by Molmil
MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE
分子名称: PROTEIN (AGGLUTININ), alpha-D-mannopyranose
著者Chandra, N.R, Ramachandraiah, G, Bachhawat, K, Dam, T.K, Surolia, A, Vijayan, M.
登録日1998-09-28
公開日1999-01-20
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of a dimeric mannose-specific agglutinin from garlic: quaternary association and carbohydrate specificity.
J.Mol.Biol., 285, 1999
6WPP
DownloadVisualize
BU of 6wpp by Molmil
HUMAN NIK IN COMPLEX WITH LIGAND COMPOUND X
分子名称: 5-fluoro-N-methyl-2-(7H-pyrrolo[2,3-d]pyrimidin-5-yl)pyrimidin-4-amine, Mitogen-activated protein kinase kinase kinase 14
著者Shih, A.Y, Hack, M, Mirzadegan, T.
登録日2020-04-27
公開日2020-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Impact of Protein Preparation on Resulting Accuracy of FEP Calculations.
J.Chem.Inf.Model., 60, 2020
1SO8
DownloadVisualize
BU of 1so8 by Molmil
Abeta-bound human ABAD structure [also known as 3-hydroxyacyl-CoA dehydrogenase type II (Type II HADH), Endoplasmic reticulum-associated amyloid beta-peptide binding protein (ERAB)]
分子名称: 3-hydroxyacyl-CoA dehydrogenase type II, CHLORIDE ION, SODIUM ION
著者Lustbader, J.W, Cirilli, M, Wu, H.
登録日2004-03-13
公開日2004-05-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献ABAD directly links Abeta to mitochondrial toxicity in Alzheimer's disease.
Science, 304, 2004
6WQ0
DownloadVisualize
BU of 6wq0 by Molmil
Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1
分子名称: DNA (301-MER), Structural protein
著者Wang, F, Baquero, D.P, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H.
登録日2020-04-28
公開日2020-07-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Proc.Natl.Acad.Sci.USA, 117, 2020
6WRH
DownloadVisualize
BU of 6wrh by Molmil
The crystal structure of Papain-Like Protease of SARS CoV-2 , C111S mutant
分子名称: CHLORIDE ION, GLYCEROL, Non-structural protein 3, ...
著者Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Welk, L, Babnigg, G, Kim, Y, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-04-29
公開日2020-05-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors.
Nat Commun, 12, 2021
4ZZE
DownloadVisualize
BU of 4zze by Molmil
Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with panose
分子名称: CHLORIDE ION, MAGNESIUM ION, Sugar binding protein of ABC transporter system, ...
著者Fredslund, F, Ejby, M, Andersen, J.M, Slotboom, D.J, Hachem, M.A.
登録日2015-05-22
公開日2016-06-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates.
J. Biol. Chem., 291, 2016
6WRM
DownloadVisualize
BU of 6wrm by Molmil
The interaction of chlorido(1,5-cyclooctadiene)([4-(2-((tert-butoxycarbonyl)amino)-3-methoxy-3-oxopropyl)-1,3-dimethyl-1H-imidazol-3-ide])rhodium(I) with HEWL after 1 month
分子名称: (4-{2-[(tert-butoxycarbonyl)amino]-3-methoxy-3-oxopropyl}-1,3-dimethyl-2,3-dihydro-1H-imidazol-2-yl)rhodium, CHLORIDE ION, Lysozyme, ...
著者Sullivan, M.P, John, M, Hartinger, C.G, Goldstone, D.C.
登録日2020-04-29
公開日2020-12-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A Combined Spectroscopic and Protein Crystallography Study Reveals Protein Interactions of Rh I (NHC) Complexes at the Molecular Level.
Inorg.Chem., 59, 2020
6OY1
DownloadVisualize
BU of 6oy1 by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR2-26
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[({4-[(1R)-1,2-dihydroxyethyl]phenyl}sulfonyl)(2-ethylbutyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate, Protease NL4-3, SULFATE ION
著者Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-05-14
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
1V74
DownloadVisualize
BU of 1v74 by Molmil
Structure of the E. coli colicin D bound to its immunity protein ImmD
分子名称: Colicin D, Colicin D immunity protein, PENTAETHYLENE GLYCOL
著者Graille, M, Mora, L, Buckingham, R.H, van Tilbeurgh, H, de Zamaroczy, M.
登録日2003-12-10
公開日2004-03-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein
Embo J., 23, 2004
6OJX
DownloadVisualize
BU of 6ojx by Molmil
PilT4 from Geobacter metallireducens bound to ATP
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者McCallum, M, Howell, P.L.
登録日2019-04-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
1XEK
DownloadVisualize
BU of 1xek by Molmil
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
分子名称: LYSOZYME
著者Nagendra, H.G, Sukumar, N, Vijayan, M.
登録日1998-01-16
公開日1998-04-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Role of water in plasticity, stability, and action of proteins: the crystal structures of lysozyme at very low levels of hydration.
Proteins, 32, 1998
5AJK
DownloadVisualize
BU of 5ajk by Molmil
Crystal structure of variola virus virulence factor F1L in complex with human Bak BH3 domain
分子名称: ACETATE ION, BCL-2 HOMOLOGOUS ANTAGONIST/KILLER, CHLORIDE ION, ...
著者Kvansakul, M, Colman, P.M.
登録日2015-02-25
公開日2015-03-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Variola Virus F1L is a Bcl-2-Like Protein that Unlike its Vaccinia Virus Counterpart Inhibits Apoptosis Independent of Bim.
Cell Death Dis., 6, 2015
6OKV
DownloadVisualize
BU of 6okv by Molmil
PilT4 from Geobacter metallireducens bound to AMP-PNP: C2ccocco conformation
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者McCallum, M, Howell, P.L.
登録日2019-04-15
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.007 Å)
主引用文献Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
1XEI
DownloadVisualize
BU of 1xei by Molmil
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
分子名称: LYSOZYME
著者Nagendra, H.G, Sukumar, N, Vijayan, M.
登録日1998-01-16
公開日1998-04-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Role of water in plasticity, stability, and action of proteins: the crystal structures of lysozyme at very low levels of hydration.
Proteins, 32, 1998
6X0N
DownloadVisualize
BU of 6x0n by Molmil
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ...
著者Halic, M, Bilokapic, S.
登録日2020-05-16
公開日2020-09-16
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin.
Nature, 585, 2020
1XEJ
DownloadVisualize
BU of 1xej by Molmil
THE CRYSTAL STRUCTURES OF LYSOZYME AT VERY LOW LEVELS OF HYDRATION
分子名称: LYSOZYME
著者Nagendra, H.G, Sukumar, N, Vijayan, M.
登録日1998-01-16
公開日1998-04-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Role of water in plasticity, stability, and action of proteins: the crystal structures of lysozyme at very low levels of hydration.
Proteins, 32, 1998
6HPO
DownloadVisualize
BU of 6hpo by Molmil
Crystallographic structure of the catalytic domain of Human Phenylalanine Hydroxylase (hPAH CD) in complex with iron at 1.6 Angstrom
分子名称: FE (III) ION, Phenylalanine-4-hydroxylase
著者Alcorlo Pages, M, Innselset Flydal, M.
登録日2018-09-21
公開日2019-06-05
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Structure of full-length human phenylalanine hydroxylase in complex with tetrahydrobiopterin.
Proc.Natl.Acad.Sci.USA, 116, 2019
6HRQ
DownloadVisualize
BU of 6hrq by Molmil
Crystal structure of Schistosoma mansoni HDAC8 complexed with NCC-149
分子名称: DIMETHYLFORMAMIDE, GLYCEROL, Histone deacetylase, ...
著者Shaik, T.B, Marek, M, Romier, C.
登録日2018-09-28
公開日2018-10-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.845 Å)
主引用文献Characterization of Histone Deacetylase 8 (HDAC8) Selective Inhibition Reveals Specific Active Site Structural and Functional Determinants.
J. Med. Chem., 61, 2018
1BPQ
DownloadVisualize
BU of 1bpq by Molmil
PHOSPHOLIPASE A2 ENGINEERING. X-RAY STRUCTURAL AND FUNCTIONAL EVIDENCE FOR THE INTERACTION OF LYSINE-56 WITH SUBSTRATES
分子名称: CALCIUM ION, PHOSPHOLIPASE A2
著者Sundaralingam, M.
登録日1991-10-28
公開日1993-10-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Phospholipase A2 engineering. X-ray structural and functional evidence for the interaction of lysine-56 with substrates.
Biochemistry, 30, 1991
6HTI
DownloadVisualize
BU of 6hti by Molmil
Crystal structure of Schistosoma mansoni HDAC8 complexed with a benzohydroxamate inhibitor 6
分子名称: GLYCEROL, Histone deacetylase, POTASSIUM ION, ...
著者Shaik, T.B, Marek, M, Romier, C.
登録日2018-10-04
公開日2018-10-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.693 Å)
主引用文献Characterization of Histone Deacetylase 8 (HDAC8) Selective Inhibition Reveals Specific Active Site Structural and Functional Determinants.
J. Med. Chem., 61, 2018
6HTT
DownloadVisualize
BU of 6htt by Molmil
Crystal structure of Schistosoma mansoni HDAC8 complexed with a benzohydroxamate inhibitor 7
分子名称: DIMETHYLFORMAMIDE, GLYCEROL, Histone deacetylase, ...
著者Shaik, T.B, Marek, M, Romier, C.
登録日2018-10-04
公開日2018-10-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.748 Å)
主引用文献Characterization of Histone Deacetylase 8 (HDAC8) Selective Inhibition Reveals Specific Active Site Structural and Functional Determinants.
J. Med. Chem., 61, 2018
5JKK
DownloadVisualize
BU of 5jkk by Molmil
Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin
分子名称: CHLORIDE ION, FE (III) ION, Ferritin heavy chain, ...
著者Kuenzle, M, Beck, T.
登録日2016-04-26
公開日2017-05-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Metal-Assisted Assembly of Protein Containers Loaded with Inorganic Nanoparticles.
Inorg.Chem., 57, 2018
6EM8
DownloadVisualize
BU of 6em8 by Molmil
S.aureus ClpC resting state, C2 symmetrised
分子名称: ATP-dependent Clp protease ATP-binding subunit ClpC
著者Carroni, M, Mogk, A.
登録日2017-10-01
公開日2017-12-27
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (8.4 Å)
主引用文献Regulatory coiled-coil domains promote head-to-head assemblies of AAA+ chaperones essential for tunable activity control.
Elife, 6, 2017
1UY8
DownloadVisualize
BU of 1uy8 by Molmil
Human Hsp90-alpha with 9-Butyl-8-(3-trimethoxy-benzyl)-9H-purin-6ylamine
分子名称: 9-BUTYL-8-(3-METHOXYBENZYL)-9H-PURIN-6-AMINE, HEAT SHOCK PROTEIN HSP 90-ALPHA
著者Wright, L, Barril, X, Dymock, B, Sheridan, L, Surgenor, A, Beswick, M, Drysdale, M, Collier, A, Massey, A, Davies, N, Fink, A, Fromont, C, Aherne, W, Boxall, K, Sharp, S, Workman, P, Hubbard, R.E.
登録日2004-03-02
公開日2004-07-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structure-Activity Relationships in Purine-Based Inhibitor Binding to Hsp90 Isoforms
Chem.Biol., 11, 2004
6HPE
DownloadVisualize
BU of 6hpe by Molmil
Crystal structure of glutathione transferase Omega 3S from Trametes versicolor in complex with the glutathione adduct of phenethyl-isothiocyanate
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Schwartz, M, Favier, F, Didierjean, C.
登録日2018-09-20
公開日2019-04-24
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The structure of Trametes versicolor glutathione transferase Omega 3S bound to its conjugation product glutathionyl-phenethylthiocarbamate reveals plasticity of its active site.
Protein Sci., 28, 2019

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon