Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 results

6V7S
DownloadVisualize
BU of 6v7s by Molmil
Crystal structure of K37-acetylated SUMO1 in complex with phosphorylated PIAS-SIM2
Descriptor: Protein PIAS, Small ubiquitin-related modifier 1
Authors:Lussier-Price, M, Wahba, H.M, Mascle, X.H, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-12-09
Release date:2020-04-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Characterization of a C-Terminal SUMO-Interacting Motif Present in Select PIAS-Family Proteins.
Structure, 28, 2020
6PJB
DownloadVisualize
BU of 6pjb by Molmil
HIV-1 Protease NL4-3 WT in Complex with Lopinavir
Descriptor: N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.984 Å)
Cite:Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
6V8L
DownloadVisualize
BU of 6v8l by Molmil
Crystal structure of Ara h 8.0201
Descriptor: Ara h 8 allergen isoform, SULFATE ION, icosanoic acid
Authors:Pote, S, Offermann, L.R, Hurlburt, B.K, McBride, J.K, Chruszcz, M.
Deposit date:2019-12-11
Release date:2020-12-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of Ara h 8.0201
To Be Published
1BO5
DownloadVisualize
BU of 1bo5 by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, PROTEIN (GLYCEROL KINASE)
Authors:Ormo, M, Bystrom, C.E, Remington, S.J.
Deposit date:1998-08-10
Release date:1999-01-13
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate.
Biochemistry, 37, 1998
6PJN
DownloadVisualize
BU of 6pjn by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR2-41
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3S,5S)-3-hydroxy-5-({1-[(methoxycarbonyl)amino]cyclopentane-1-carbonyl}amino)-1,6-diphenylhexan-2-yl]carbamate, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
1BOT
DownloadVisualize
BU of 1bot by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, PROTEIN (GLYCEROL KINASE)
Authors:Ormo, M, Bystrom, C.E, Remington, S.J.
Deposit date:1998-08-05
Release date:1999-01-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate.
Biochemistry, 37, 1998
6F4K
DownloadVisualize
BU of 6f4k by Molmil
Crystal structure of glutathione transferase Omega 3S from Trametes versicolor in complex with hexyl-glutathione
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Schwartz, M, Favier, F, Didierjean, C.
Deposit date:2017-11-29
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor.
Sci Rep, 8, 2018
7AV6
DownloadVisualize
BU of 7av6 by Molmil
FAST in a domain-swapped dimer form
Descriptor: FORMIC ACID, Photoactive yellow protein
Authors:Bukhdruker, S, Remeeva, A, Ruchkin, D, Gorbachev, D, Povarova, N, Mineev, K, Goncharuk, S, Baranov, M, Mishin, A, Borshchevskiy, V.
Deposit date:2020-11-04
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.
Chem Sci, 12, 2021
4PZP
DownloadVisualize
BU of 4pzp by Molmil
Substrate-free structure of D-alanine carrier protein ligase DltA from Bacillus cereus
Descriptor: D-alanine--poly(phosphoribitol) ligase subunit 1
Authors:Du, L, Atila, M, Luo, Y.
Deposit date:2014-03-31
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thiolation-enhanced substrate recognition by D-alanyl carrier protein ligase DltA from Bacillus cereus.
F1000Res, 3, 2014
6F51
DownloadVisualize
BU of 6f51 by Molmil
Crystal structure of glutathione transferase Omega 3S from Trametes versicolor in complex with glutathionyl-phenylacetophenone
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, L-gamma-glutamyl-S-(2-biphenyl-4-yl-2-oxoethyl)-L-cysteinylglycine, ...
Authors:Schwartz, M, Favier, F, Didierjean, C.
Deposit date:2017-11-30
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor.
Sci Rep, 8, 2018
1TAC
DownloadVisualize
BU of 1tac by Molmil
HIV-1 TAT CYS-, NMR, 10 STRUCTURES
Descriptor: TAT PROTEIN
Authors:Roesch, P, Boehm, M, Sticht, H.
Deposit date:1998-03-13
Release date:1999-03-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of HIV-1 Tat Protein
To be Published
6PA7
DownloadVisualize
BU of 6pa7 by Molmil
The cryo-EM structure of the human DNMT3A2-DNMT3B3 complex bound to nucleosome.
Descriptor: CHLORIDE ION, DNA (167-MER), DNA (cytosine-5)-methyltransferase 3A, ...
Authors:Xu, T.H, Liu, M, Zhou, X.E, Liang, G, Zhao, G, Xu, H.E, Melcher, K, Jones, P.A.
Deposit date:2019-06-11
Release date:2020-06-17
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B.
Nature, 586, 2020
6VCX
DownloadVisualize
BU of 6vcx by Molmil
Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 1 (AtMAT1)
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Sekula, B, Ruszkowski, M, Dauter, Z.
Deposit date:2019-12-23
Release date:2020-02-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula.
Int.J.Biol.Macromol., 151, 2020
1XC6
DownloadVisualize
BU of 1xc6 by Molmil
Native Structure Of Beta-Galactosidase from Penicillium sp. in complex with Galactose
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rojas, A.L, Nagem, R.A.P, Neustroev, K.N, Arand, M, Adamska, M, Eneyskaya, E.V, Kulminskaya, A.A, Garratt, R.C, Golubev, A.M, Polikarpov, I.
Deposit date:2004-09-01
Release date:2004-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of beta-Galactosidase from Penicillium sp. and its Complex with Galactose
J.Mol.Biol., 343, 2004
6SKU
DownloadVisualize
BU of 6sku by Molmil
Legionella effector AnkX in complex with human Rab1b
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Phosphocholine transferase AnkX, ...
Authors:Ernst, S, Ecker, F, Kaspers, M, Ochtrop, P, Hedberg, C, Groll, M, Itzen, A.
Deposit date:2019-08-16
Release date:2020-06-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Legionellaeffector AnkX displaces the switch II region for Rab1b phosphocholination.
Sci Adv, 6, 2020
1T0W
DownloadVisualize
BU of 1t0w by Molmil
25 NMR structures of Truncated Hevein of 32 aa (Hevein-32) complex with N,N,N-triacetylglucosamina
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hevein
Authors:Aboitiz, N, Vila-Perello, M, Groves, P, Asensio, J.L, Andreu, D, Canada, F.J, Jimenez-Barbero, J.
Deposit date:2004-04-13
Release date:2004-09-28
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:NMR and modeling studies of protein-carbohydrate interactions: synthesis, three-dimensional structure, and recognition properties of a minimum hevein domain with binding affinity for chitooligosaccharides
Chembiochem, 5, 2004
6UYP
DownloadVisualize
BU of 6uyp by Molmil
Crystal structure of K39-acetylated SUMO1 in complex with PML-SIM
Descriptor: Protein PML, Small ubiquitin-related modifier 1
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
7O4Z
DownloadVisualize
BU of 7o4z by Molmil
Crystal structure of the carbonic anhydrase-like domain of CcmM from Synechococcus elongatus (strain PCC 7942)
Descriptor: CHLORIDE ION, Carboxysome assembly protein CcmM, NICKEL (II) ION
Authors:Zang, K, Wang, H, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2021-04-07
Release date:2021-11-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Scaffolding protein CcmM directs multiprotein phase separation in beta-carboxysome biogenesis.
Nat.Struct.Mol.Biol., 28, 2021
2MF6
DownloadVisualize
BU of 2mf6 by Molmil
Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form
Descriptor: Avidin, Avidin-related protein 4/5
Authors:Tossavainen, H, Kukkurainen, S, Maatta, J.A.E, Pihlajamaa, T, Hytonen, V.P, Kulomaa, M.S, Permi, P.
Deposit date:2013-10-07
Release date:2014-08-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Chimeric Avidin - NMR Structure and Dynamics of a 56 kDa Homotetrameric Thermostable Protein
Plos One, 9, 2014
6MHU
DownloadVisualize
BU of 6mhu by Molmil
Nucleotide-free Cryo-EM Structure of E.coli LptB2FG Transporter
Descriptor: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-5-[(2~{S},3~{S},4~{R},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{R},5~{S},6~{R})-6-[(1~{S})-2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid, Lipopolysaccharide export system ATP-binding protein LptB, Lipopolysaccharide export system permease protein LptF, ...
Authors:Orlando, B.J, Li, Y, Liao, M.
Deposit date:2018-09-18
Release date:2019-04-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of lipopolysaccharide extraction by the LptB2FGC complex.
Nature, 567, 2019
6F6L
DownloadVisualize
BU of 6f6l by Molmil
R2-like ligand-binding oxidase Y162F mutant with aerobically reconstituted Mn/Fe cofactor
Descriptor: FE (III) ION, MANGANESE (II) ION, MANGANESE (III) ION, ...
Authors:Griese, J.J, Hogbom, M.
Deposit date:2017-12-05
Release date:2018-12-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase.
J. Biol. Inorg. Chem., 24, 2019
6UYT
DownloadVisualize
BU of 6uyt by Molmil
Crystal structure of K39-acetylated SUMO1 in complex with phosphorylated PML-SIM
Descriptor: Protein PML, Small ubiquitin-related modifier 1
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020
6EVR
DownloadVisualize
BU of 6evr by Molmil
Crystal structure of human carbonic anhydrase I in complex with the 4-(4 acetyl-3-benzylpiperazine-1 carbonyl)benzene-1-sulfonamide inhibitor
Descriptor: 4-[(3~{S})-4-ethanoyl-3-(phenylmethyl)piperazin-1-yl]carbonylbenzenesulfonamide, ACETATE ION, Carbonic anhydrase 1, ...
Authors:Ferraroni, M, Supuran, C.T, Chiapponi, D, Chiaramonte, N.
Deposit date:2017-11-02
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:2-Benzylpiperazine: A new scaffold for potent human carbonic anhydrase inhibitors. Synthesis, enzyme inhibition, enantioselectivity, computational and crystallographic studies and in vivo activity for a new class of intraocular pressure lowering agents.
Eur J Med Chem, 151, 2018
6MI3
DownloadVisualize
BU of 6mi3 by Molmil
Structure of NEMO(51-112) with N- and C-terminal coiled-coil adaptors.
Descriptor: NF-kB ESSENTIAL MODULATOR,NF-kappa-B essential modulator,NF-kB ESSENTIAL MODULATOR
Authors:Pellegrini, M, Barczewski, A.H, Mierke, D.F, Ragusa, M.J.
Deposit date:2018-09-19
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:The IKK-binding domain of NEMO is an irregular coiled coil with a dynamic binding interface.
Sci Rep, 9, 2019
6UYZ
DownloadVisualize
BU of 6uyz by Molmil
Crystal structure of K46-acetylated SUMO1 in complex with phosphorylated DAXX
Descriptor: Small ubiquitin-related modifier 1, phosphorylated DAXX
Authors:Wahba, H.M, Gagnon, C, Mascle, X.H, Lussier-Price, M, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-11-14
Release date:2019-11-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.
Structure, 28, 2020

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon