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PDB: 38 件

3HZQ
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Structure of a tetrameric MscL in an expanded intermediate state
分子名称: Large-conductance mechanosensitive channel
著者Liu, Z.F, Gandhi, C.S, Rees, D.C.
登録日2009-06-24
公開日2009-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.82 Å)
主引用文献Structure of a tetrameric MscL in an expanded intermediate state.
Nature, 461, 2009
3JCU
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Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Wei, X.P, Zhang, X.Z, Su, X.D, Cao, P, Liu, X.Y, Li, M, Chang, W.R, Liu, Z.F.
登録日2016-03-10
公開日2016-05-25
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of spinach photosystem II-LHCII supercomplex at 3.2 A resolution
Nature, 534, 2016
5EIK
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Structure of a Trimeric Intracellular Cation channel from C. elegans in the absence of Ca2+
分子名称: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ACETATE ION, DECYL-BETA-D-MALTOPYRANOSIDE, ...
著者Hu, M.H, Yang, H.T, Liu, Z.F.
登録日2015-10-30
公開日2016-10-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Pore architecture of TRIC channels and insights into their gating mechanism.
Nature, 538, 2016
5EGI
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Structure of a Trimeric Intracellular Cation channel from C. elegans with bound Ca2+
分子名称: CALCIUM ION, DECYL-BETA-D-MALTOPYRANOSIDE, Uncharacterized protein Y57A10A.10, ...
著者Yang, H.T, Hu, M.H, Liu, Z.F.
登録日2015-10-27
公開日2016-10-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Pore architecture of TRIC channels and insights into their gating mechanism.
Nature, 538, 2016
5WTR
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Crystal structure of a prokaryotic TRIC channel in 0.5 M KCl
分子名称: 1,2-ETHANEDIOL, POTASSIUM ION, TRISTEAROYLGLYCEROL, ...
著者Ou, X.M, Wang, L.F, Yang, H.T, Liu, X.Y, Liu, Z.F.
登録日2016-12-14
公開日2017-04-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Ion and water binding sites inside an occluded hourglass pore of a TRIC channel
BMC BIOL., 2017
4YZG
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BU of 4yzg by Molmil
Structure of the Arabidopsis TAP38/PPH1, a state-transition phosphatase responsible for dephosphorylation of LHCII
分子名称: MANGANESE (II) ION, Protein phosphatase 2C 57, SULFATE ION
著者Wei, X.P, Guo, J.T, Li, M, Liu, Z.F.
登録日2015-03-25
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Mechanism Underlying the Specific Recognition between the Arabidopsis State-Transition Phosphatase TAP38/PPH1 and Phosphorylated Light-Harvesting Complex Protein Lhcb1
Plant Cell, 27, 2015
4YZH
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Structure of the Arabidopsis TAP38/PPH1 in complex with pLhcb1 phosphopeptide substrate
分子名称: Chlorophyll a-b binding protein 2, chloroplastic, MANGANESE (II) ION, ...
著者Wei, X.P, Guo, J.T, Li, M, Liu, Z.F.
登録日2015-03-25
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Mechanism Underlying the Specific Recognition between the Arabidopsis State-Transition Phosphatase TAP38/PPH1 and Phosphorylated Light-Harvesting Complex Protein Lhcb1
Plant Cell, 27, 2015
6IG2
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BU of 6ig2 by Molmil
Structure of mitochondrial CDP-DAG synthase Tam41 complexed with CTP, delta 74, F240A
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Phosphatidate cytidylyltransferase, mitochondrial
著者Jiao, H.Z, Yin, Y, Liu, Z.F.
登録日2018-09-23
公開日2019-07-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.882 Å)
主引用文献Structures of the Mitochondrial CDP-DAG Synthase Tam41 Suggest a Potential Lipid Substrate Pathway from Membrane to the Active Site.
Structure, 27, 2019
6IG4
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Structure of mitochondrial CDP-DAG synthase Tam41, delta 74
分子名称: PLATINUM (II) ION, Phosphatidate cytidylyltransferase, mitochondrial, ...
著者Jiao, H.Z, Yin, Y, Liu, Z.F.
登録日2018-09-23
公開日2019-07-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.261 Å)
主引用文献Structures of the Mitochondrial CDP-DAG Synthase Tam41 Suggest a Potential Lipid Substrate Pathway from Membrane to the Active Site.
Structure, 27, 2019
6KAC
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BU of 6kac by Molmil
Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Sheng, X, Li, A.J, Song, D.F, Liu, Z.F.
登録日2019-06-21
公開日2019-10-23
最終更新日2019-12-25
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural insight into light harvesting for photosystem II in green algae.
Nat.Plants, 5, 2019
6KIG
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Structure of cyanobacterial photosystem I-IsiA supercomplex
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Cao, P, Cao, D.F, Si, L, Su, X.D, Chang, W.R, Liu, Z.F, Zhang, X.Z, Li, M.
登録日2019-07-18
公開日2020-02-12
最終更新日2020-03-04
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for energy and electron transfer of the photosystem I-IsiA-flavodoxin supercomplex.
Nat.Plants, 6, 2020
7F3U
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BU of 7f3u by Molmil
Cryo-EM structure of human TMEM120A in the CoASH-free state
分子名称: Transmembrane protein 120A
著者Rong, Y, Gao, Y.W, Song, D.F, Zhao, Y, Liu, Z.F.
登録日2021-06-17
公開日2021-06-30
最終更新日2022-01-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献TMEM120A contains a specific coenzyme A-binding site and might not mediate poking- or stretch-induced channel activities in cells.
Elife, 10, 2021
7F3T
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BU of 7f3t by Molmil
Cryo-EM structure of human TMEM120A in the CoASH-bound state
分子名称: COENZYME A, Transmembrane protein 120A
著者Song, D.F, Rong, Y, Liu, Z.F.
登録日2021-06-17
公開日2021-06-30
最終更新日2022-01-12
実験手法ELECTRON MICROSCOPY (3.69 Å)
主引用文献TMEM120A contains a specific coenzyme A-binding site and might not mediate poking- or stretch-induced channel activities in cells.
Elife, 10, 2021
6AE9
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BU of 6ae9 by Molmil
X-ray structure of the photosystem II phosphatase PBCP
分子名称: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Liu, X.Y, Chai, J.C, Ou, X.M, Liu, Z.F.
登録日2018-08-03
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural Insights into Substrate Selectivity, Catalytic Mechanism, and Redox Regulation of Rice Photosystem II Core Phosphatase.
Mol Plant, 12, 2019
7DRJ
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BU of 7drj by Molmil
Crystal structure of phosphatidylglycerol phosphate synthase in complex with phosphatidylglycerol phosphate
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1,4-BUTANEDIOL, ACETIC ACID, ...
著者Yang, B.W, Liu, Z.F.
登録日2020-12-28
公開日2021-12-08
最終更新日2022-02-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The phosphatidylglycerol phosphate synthase PgsA utilizes a trifurcated amphipathic cavity for catalysis at the membrane-cytosol interface.
Curr Res Struct Biol, 3, 2021
7DRK
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BU of 7drk by Molmil
Crystal structure of phosphatidylglycerol phosphate synthase in complex with cytidine diphosphate-diacylglycerol
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 1,4-BUTANEDIOL, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, ...
著者Yang, B.W, Liu, Z.F.
登録日2020-12-28
公開日2021-12-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The phosphatidylglycerol phosphate synthase PgsA utilizes a trifurcated amphipathic cavity for catalysis at the membrane-cytosol interface.
Curr Res Struct Biol, 3, 2021
6KAD
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BU of 6kad by Molmil
Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Sheng, X, Watanabe, A, Li, A.J, Kim, E, Song, C, Murata, K, Song, D.F, Minagawa, J, Liu, Z.F.
登録日2019-06-21
公開日2019-10-23
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural insight into light harvesting for photosystem II in green algae.
Nat.Plants, 5, 2019
6KIF
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BU of 6kif by Molmil
Structure of cyanobacterial photosystem I-IsiA-flavodoxin supercomplex
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Cao, P, Cao, D.F, Si, L, Su, X.D, Chang, W.R, Liu, Z.F, Zhang, X.Z, Li, M.
登録日2019-07-18
公開日2020-02-12
最終更新日2020-03-04
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for energy and electron transfer of the photosystem I-IsiA-flavodoxin supercomplex.
Nat.Plants, 6, 2020
6KVL
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Crystal structure of UDP-RebB-SrUGT76G1
分子名称: (8alpha,9beta,10alpha,13alpha)-13-{[beta-D-glucopyranosyl-(1->2)-[beta-D-glucopyranosyl-(1->3)]-beta-D-glucopyranosyl]oxy}kaur-16-en-18-oic acid, UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE
著者Li, J.X, Liu, Z.F, Wang, Y, Zhang, P.
登録日2019-09-04
公開日2019-11-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1.
Plant Commun., 1, 2020
6KVI
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BU of 6kvi by Molmil
Crystal structure of UDP-SrUGT76G1
分子名称: UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE
著者Li, J.X, Liu, Z.F, Wang, Y, Zhang, P.
登録日2019-09-04
公開日2019-11-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.598 Å)
主引用文献Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1.
Plant Commun., 1, 2020
6KVJ
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BU of 6kvj by Molmil
Crystal structure of UDPX-SrUGT76G1
分子名称: UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE
著者Li, J.X, Liu, Z.F, Wang, Y, Zhang, P.
登録日2019-09-04
公開日2019-11-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1.
Plant Commun., 1, 2020
6KVK
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Crystal structure of UDP-Sm-SrUGT76G1
分子名称: Steviolmonoside, UDP-glycosyltransferase 76G1, URIDINE-5'-DIPHOSPHATE
著者Li, J.X, Liu, Z.F, Wang, Y, Zhang, P.
登録日2019-09-04
公開日2019-11-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1.
Plant Commun., 1, 2020
6LVF
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Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with one lysyl-phosphatidylglycerol molecule
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, Low pH-inducible protein LpiA, ...
著者Song, D.F, Jiao, H.Z, Liu, Z.F.
登録日2020-02-02
公開日2021-02-03
最終更新日2021-08-18
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Phospholipid translocation captured in a bifunctional membrane protein MprF.
Nat Commun, 12, 2021
6LV0
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BU of 6lv0 by Molmil
Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF) from Rhizobium tropici
分子名称: Low pH-inducible protein LpiA
著者Jiao, H.Z, Song, D.F, Liu, Z.F.
登録日2020-02-02
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Phospholipid translocation captured in a bifunctional membrane protein MprF.
Nat Commun, 12, 2021
7DUW
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BU of 7duw by Molmil
Cryo-EM structure of the multiple peptide resistance factor (MprF) loaded with two lysyl-phosphatidylglycerol molecules
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (2~{R},3~{S},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-6-[2-[[(2~{R},3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxymethyl]-4-[(1~{R},2~{R},4~{S},5'~{R},6~{R},7~{R},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxy-butoxy]-4,5-bis(oxidanyl)oxan-3-yl]oxy-oxane-3,4,5-triol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Song, D.F, Jiao, H.Z, Liu, Z.F.
登録日2021-01-12
公開日2021-04-21
最終更新日2021-08-18
実験手法ELECTRON MICROSCOPY (2.96 Å)
主引用文献Phospholipid translocation captured in a bifunctional membrane protein MprF.
Nat Commun, 12, 2021

 

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