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PDB: 214 results

7UX5
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BU of 7ux5 by Molmil
Structure of PDL1 in complex with FP28136, a Helicon Polypeptide
Descriptor: Helicon FP28136, N,N'-(1,4-phenylene)diacetamide, Programmed cell death 1 ligand 1
Authors:Agarwal, S, Li, K, Tokareva, O, Thomson, T, Travaline, T, Wahl, S, Verdine, G, McGee, J.
Deposit date:2022-05-05
Release date:2022-12-28
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries.
Proc.Natl.Acad.Sci.USA, 119, 2022
6AEZ
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BU of 6aez by Molmil
Crystal structure of human CCL5 trimer
Descriptor: C-C motif chemokine 5, SULFATE ION
Authors:Chen, Y.C, Li, K.M, Chen, P.J, Zarivach, R, Sun, Y.J, Sue, S.C.
Deposit date:2018-08-07
Release date:2019-08-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Integrative Model to Coordinate the Oligomerization and Aggregation Mechanisms of CCL5.
J.Mol.Biol., 432, 2020
5WIN
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BU of 5win by Molmil
JAK2 Pseudokinase in complex with JNJ7706621
Descriptor: 4-({5-amino-1-[(2,6-difluorophenyl)carbonyl]-1H-1,2,4-triazol-3-yl}amino)benzenesulfonamide, Tyrosine-protein kinase JAK2
Authors:Li, Q, Eck, M.J, Li, K, Park, E.
Deposit date:2017-07-19
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
6QD5
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BU of 6qd5 by Molmil
X-ray Structure of the Human Urea Channel SLC14A1/UT1
Descriptor: CHOLESTEROL HEMISUCCINATE, TETRAETHYLENE GLYCOL, Urea transporter 1, ...
Authors:Dietz, L, Chi, G, Pike, A.C.W, Moreau, C, Man, H, Snee, M, Scacioc, A, Shrestha, L, Mukhopadhyay, S.M.M, Mckinley, G, Ellis, K, Kliszcak, M, Chalk, R, Borkowska, O, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Durr, K.L, Structural Genomics Consortium (SGC)
Deposit date:2018-12-31
Release date:2019-01-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.398 Å)
Cite:X-ray Structure of the Human Urea Channel SLC14A1/UT1
To Be Published
7KLP
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BU of 7klp by Molmil
Crystal structure of a three-tetrad, parallel, K+ stabilized human telomeric G-quadruplex
Descriptor: HEXAETHYLENE GLYCOL, POTASSIUM ION, telomeric DNA
Authors:Yatsunyk, L.A, Li, K.S, Chen, E.V.
Deposit date:2020-10-30
Release date:2020-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Water spines and networks in G-quadruplex structures.
Nucleic Acids Res., 49, 2021
5WIJ
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BU of 5wij by Molmil
JAK2 Pseudokinase in complex with NU6140
Descriptor: 4-{[6-(cyclohexylmethoxy)-7H-purin-2-yl]amino}-N,N-diethylbenzamide, Tyrosine-protein kinase JAK2
Authors:Li, Q, Eck, M.J, Li, K, Park, E.
Deposit date:2017-07-19
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
5WIL
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BU of 5wil by Molmil
JAK2 Pseudokinase in complex with AZD7762
Descriptor: 5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide, Tyrosine-protein kinase JAK2
Authors:Li, Q, Eck, M.J, Li, K, Park, E.
Deposit date:2017-07-19
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
5WIK
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BU of 5wik by Molmil
JAK2 Pseudokinase in complex with BI-D1870
Descriptor: (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one, Tyrosine-protein kinase JAK2
Authors:Li, Q, Eck, M.J, Li, K, Park, E.
Deposit date:2017-07-19
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
5WIM
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BU of 5wim by Molmil
JAK2 Pseudokinase in complex with AT9283
Descriptor: 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea, Tyrosine-protein kinase JAK2
Authors:Li, Q, Eck, M.J, Li, K, Park, E.
Deposit date:2017-07-19
Release date:2018-08-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
6AFZ
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BU of 6afz by Molmil
Proton pyrophosphatase-E225H mutant
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.483 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
6AFW
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BU of 6afw by Molmil
Proton pyrophosphatase-T228D mutant
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.185 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
6AFV
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BU of 6afv by Molmil
Proton pyrophosphatase-L555K mutant
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
6AFU
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BU of 6afu by Molmil
Proton pyrophosphatase-L555M mutant
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
6AFY
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BU of 6afy by Molmil
Proton pyrophosphatase-E225S mutant
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
6AFS
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BU of 6afs by Molmil
Proton pyrophosphatase - two phosphates-bound
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Tsai, J.-Y, Li, K.-M, Sun, Y.-J.
Deposit date:2018-08-08
Release date:2019-04-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Roles of the Hydrophobic Gate and Exit Channel in Vigna radiata Pyrophosphatase Ion Translocation.
J. Mol. Biol., 431, 2019
8F7P
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BU of 8f7p by Molmil
BRAF kinase in complex with LXH254 (naporafenib)
Descriptor: N-{3-[2-(2-hydroxyethoxy)-6-(morpholin-4-yl)pyridin-4-yl]-4-methylphenyl}-2-(trifluoromethyl)pyridine-4-carboxamide, Serine/threonine-protein kinase B-raf
Authors:Tkacik, E, Li, K, Gonzalez Del-Pino, G, Eck, M.J.
Deposit date:2022-11-20
Release date:2023-04-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structure and RAF family kinase isoform selectivity of type II RAF inhibitors tovorafenib and naporafenib.
J.Biol.Chem., 299, 2023
8F7O
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BU of 8f7o by Molmil
BRAF kinase in complex with TAK580 (tovorafenib)
Descriptor: 6-amino-5-chloro-N-[(1R)-1-(5-{[5-chloro-4-(trifluoromethyl)pyridin-2-yl]carbamoyl}-1,3-thiazol-2-yl)ethyl]pyrimidine-4-carboxamide, Serine/threonine-protein kinase B-raf
Authors:Tkacik, E, Li, K, Gonzalez Del-Pino, G, Eck, M.J.
Deposit date:2022-11-20
Release date:2023-04-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.54 Å)
Cite:Structure and RAF family kinase isoform selectivity of type II RAF inhibitors tovorafenib and naporafenib.
J.Biol.Chem., 299, 2023
8H8F
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BU of 8h8f by Molmil
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR (resting state)
Descriptor: Proton-activated chloride channel
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
8H8E
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BU of 8h8e by Molmil
Structure of the dimeric Xenopus tropical acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (closed state)
Descriptor: Proton-activated chloride channel, tRNA (75-MER)of Spodoptera frugiperda
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
8H8D
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BU of 8h8d by Molmil
Structure of Xenopus tropicalis acid-sensitive outwardly rectifying channel ASOR trimer bound with tRNA (intermediate state)
Descriptor: Proton-activated chloride channel
Authors:Chi, P, Wang, X, Li, J, Li, K, Zhang, Y, Geng, J, Wu, J, Deng, D.
Deposit date:2022-10-22
Release date:2024-05-01
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.26 Å)
Cite:Molecular insights into the inhibition of proton-activated chloride channel by transfer RNA.
Cell Res., 34, 2024
7Y7B
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BU of 7y7b by Molmil
Cryo-EM structure of cryptophyte photosystem I
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol, ...
Authors:Zhao, L.S, Li, K, Zhang, Y.Z, Liu, L.N.
Deposit date:2022-06-22
Release date:2023-04-12
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structural basis and evolution of the photosystem I-light-harvesting supercomplex of cryptophyte algae.
Plant Cell, 35, 2023
8IVZ
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BU of 8ivz by Molmil
Crystal structure of talin R7 in complex with KANK1 KN motif
Descriptor: KN motif and ankyrin repeat domains 1, Talin-1
Authors:Xu, Y, Li, K, Wei, Z, Cong, Y.
Deposit date:2023-03-29
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:KANK1 shapes focal adhesions by orchestrating protein binding, mechanical force sensing, and phase separation.
Cell Rep, 42, 2023
7Y8A
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BU of 7y8a by Molmil
Cryo-EM structure of cryptophyte photosystem I
Descriptor: (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol, (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol, ...
Authors:Zhao, L.S, Zhang, Y.Z, Liu, L.N, Li, K.
Deposit date:2022-06-23
Release date:2023-04-12
Last modified:2023-07-12
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structural basis and evolution of the photosystem I-light-harvesting supercomplex of cryptophyte algae.
Plant Cell, 35, 2023
6D2I
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BU of 6d2i by Molmil
JAK2 Pseudokinase V617F in complex with AT9283
Descriptor: 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea, Tyrosine-protein kinase
Authors:Li, Q, Li, K, Eck, M.J.
Deposit date:2018-04-13
Release date:2019-03-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.192 Å)
Cite:Discovery and Structural Characterization of ATP-Site Ligands for the Wild-Type and V617F Mutant JAK2 Pseudokinase Domain.
ACS Chem. Biol., 14, 2019
7K56
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BU of 7k56 by Molmil
Structure of VCP dodecamer purified from H1299 cells
Descriptor: Transitional endoplasmic reticulum ATPase
Authors:Yu, G, Bai, Y, Li, K, Jiang, W, Zhang, Z.Y.
Deposit date:2020-09-16
Release date:2021-10-13
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-electron microscopy structures of VCP/p97 reveal a new mechanism of oligomerization regulation.
Iscience, 24, 2021

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